| Basic Information | |
|---|---|
| Species | Picea abies |
| Cazyme ID | MA_10430135g0020 |
| Family | GH28 |
| Protein Properties | Length: 445 Molecular Weight: 49033.4 Isoelectric Point: 5.2109 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 94 | 404 | 0 |
| ADKGGAQLYVPAGIWLTGSFNLTSHLTLYLDRNSVILGSQESRDWPLIDPLPSYGRGRELPGGRYCSLIHGYNLTDVIITGDNGTIDGQGAIWWDWFHNH TVNFTRPHLLELRSSTDIVIANLTFLNSPFWNIHPVYSSNVRIQNITILAPSDSPNTDGIDPDSCTDVCIEDCYISTGDDAIAIKSGWDEYGIAFGRPSS NIIIRHTICQSNTSAGLALGSEMSGGITDIHVADILVINTETAISVKTSAGRGGYVKDIFISNVTMNNVKYAIGFTGFYGDHPDDRYDPDALHVVERIIF KDIVGENIKIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 445 Download |
| MISVRILSDS VLWSRKLKTR LFILQEFRLL LLNCIIAIGF GLEIQQRTTS CSLNRAWSSR 60 PHSVSITEFG AVGDGFTLNT HAFQNAIFYV NTFADKGGAQ LYVPAGIWLT GSFNLTSHLT 120 LYLDRNSVIL GSQESRDWPL IDPLPSYGRG RELPGGRYCS LIHGYNLTDV IITGDNGTID 180 GQGAIWWDWF HNHTVNFTRP HLLELRSSTD IVIANLTFLN SPFWNIHPVY SSNVRIQNIT 240 ILAPSDSPNT DGIDPDSCTD VCIEDCYIST GDDAIAIKSG WDEYGIAFGR PSSNIIIRHT 300 ICQSNTSAGL ALGSEMSGGI TDIHVADILV INTETAISVK TSAGRGGYVK DIFISNVTMN 360 NVKYAIGFTG FYGDHPDDRY DPDALHVVER IIFKDIVGEN IKIAESQGRV HTSTATIAIM 420 PQVDEVEVVS DPKDIDLSTA RSRVL 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 3.0e-24 | 52 | 398 | 359 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 8.0e-29 | 62 | 398 | 351 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-30 | 168 | 367 | 205 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-60 | 64 | 363 | 323 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU18828.1 | 0 | 51 | 404 | 19 | 382 | unknown [Glycine max] |
| EMBL | CBI37055.1 | 0 | 60 | 404 | 39 | 383 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002273855.1 | 0 | 60 | 404 | 90 | 434 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301554.1 | 0 | 60 | 404 | 39 | 382 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002535132.1 | 0 | 48 | 404 | 37 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 62 | 396 | 26 | 381 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 62 | 396 | 26 | 381 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 62 | 396 | 26 | 381 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 62 | 396 | 26 | 381 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 7e-20 | 98 | 399 | 39 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GE474332 | 292 | 33 | 324 | 0 |
| CO474450 | 277 | 33 | 309 | 0 |
| DV994979 | 285 | 33 | 317 | 0 |
| EX380083 | 278 | 40 | 317 | 0 |
| HO797919 | 345 | 60 | 404 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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