y
Basic Information | |
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Species | Picea abies |
Cazyme ID | MA_10430145g0020 |
Family | PL1 |
Protein Properties | Length: 398 Molecular Weight: 44254.1 Isoelectric Point: 7.7458 |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 142 | 355 | 0 |
VIQKEPMWIIFERDMVIQLKEELIMNSFKTIDGRGVNVHIAYGPCITIHRVRNIIIHGIHVHDCKPAGNAMVRDSPTHYGWRPICDGDGISISRGRHIWV DHVSLSNCADGLIDAIRGSTAITISNSYFTHHNEVMLLGHHDNYTADVHMQVTIAFNHFGEDLVQRMPSQGNRFLAPENRWAKEVTKRVNENKDEWKKWN WRSEGDMMLNGAYF |
Full Sequence |
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Protein Sequence Length: 398 Download |
MKNRSILTCM FLIEILCIHG GAAPKPFGPL VAENSREAET ANGNTTAAEK DPDSIVQIVQ 60 RSIDNSTRRR ELGYLSCGTG NPIDDCWRCD PNWENHRKRL ADCAIGFGRH AQGGKKGKYY 120 VVTDPSDFDA VNPLPGTLRH AVIQKEPMWI IFERDMVIQL KEELIMNSFK TIDGRGVNVH 180 IAYGPCITIH RVRNIIIHGI HVHDCKPAGN AMVRDSPTHY GWRPICDGDG ISISRGRHIW 240 VDHVSLSNCA DGLIDAIRGS TAITISNSYF THHNEVMLLG HHDNYTADVH MQVTIAFNHF 300 GEDLVQRMPS QGNRFLAPEN RWAKEVTKRV NENKDEWKKW NWRSEGDMML NGAYFTPSGA 360 VASSAYAKAS SLAARPSADV GPLTQDAGVL QCRSGARC 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 9.0e-20 | 168 | 309 | 152 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-43 | 161 | 311 | 174 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-53 | 155 | 311 | 168 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK66161.1 | 0 | 62 | 398 | 1 | 368 | pectate lyase [Fragaria x ananassa] |
GenBank | ABR17766.1 | 0 | 1 | 398 | 1 | 426 | unknown [Picea sitchensis] |
GenBank | ABR17909.1 | 0 | 1 | 398 | 1 | 429 | unknown [Picea sitchensis] |
RefSeq | NP_567409.1 | 0 | 47 | 398 | 84 | 470 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002297822.1 | 0 | 9 | 398 | 9 | 450 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 81 | 390 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 81 | 390 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 0.00000000001 | 150 | 309 | 50 | 199 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jta_A | 0.0000002 | 106 | 309 | 22 | 243 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jrg_B | 0.0000002 | 106 | 309 | 22 | 243 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |