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Basic Information | |
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Species | Picea abies |
Cazyme ID | MA_10430145g0030 |
Family | PL1 |
Protein Properties | Length: 380 Molecular Weight: 42651.6 Isoelectric Point: 9.5249 |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 93 | 299 | 0 |
VIQKEPLWIVFKRDMVIQLKEELIMNSFKTIDGRGFSVHIAYGPCITIQHVRHIIIHGIHVHHCKPAGNAMVRDSPTHYGWRTICDGDGISIFGGSHIWV DHVSLSRCADGLIDAIMGSTAITISNSYFSNHNEVMLLGHRDSYAADVKMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINS EGNRFLA |
Full Sequence |
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Protein Sequence Length: 380 Download |
MAKIFRSWVK TGSPSLQHYV STLEIPKVIQ DNLNVFWIFE NQSETPIRKR LADCAIGFGK 60 DSQGGKKGKY YVVTDHSDYD AVNPRPGTLR HAVIQKEPLW IVFKRDMVIQ LKEELIMNSF 120 KTIDGRGFSV HIAYGPCITI QHVRHIIIHG IHVHHCKPAG NAMVRDSPTH YGWRTICDGD 180 GISIFGGSHI WVDHVSLSRC ADGLIDAIMG STAITISNSY FSNHNEVMLL GHRDSYAADV 240 KMQVTIAFNH FGEGLVQRMP RCRHGYFHVV NNDYTHWEMY AIGGSANPTI NSEGNRFLAP 300 ANRRAKEVTK RVNQKKDEWK QWNWRSEGDM MLNGAYFTPS GAVASSAYLK ASSLAAKPST 360 HVGPLTQDAG VLRCRRGARC 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 9.0e-24 | 157 | 297 | 153 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 6.0e-63 | 112 | 297 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 9.0e-69 | 106 | 300 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK66161.1 | 0 | 48 | 380 | 36 | 368 | pectate lyase [Fragaria x ananassa] |
GenBank | ABR17766.1 | 0 | 48 | 380 | 95 | 426 | unknown [Picea sitchensis] |
GenBank | ABR17909.1 | 0 | 48 | 380 | 97 | 429 | unknown [Picea sitchensis] |
EMBL | CAB36835.1 | 0 | 48 | 380 | 42 | 374 | putative pectate lyase A11 (fragment) [Arabidopsis thaliana] |
RefSeq | NP_567409.1 | 0 | 48 | 380 | 138 | 470 | pectate lyase family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 48 | 372 | 18 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 48 | 372 | 18 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 0.000000000000009 | 101 | 299 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jta_A | 0.0000000000003 | 166 | 341 | 128 | 325 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jrg_B | 0.0000000000003 | 166 | 341 | 128 | 325 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GT740031 | 296 | 48 | 342 | 0 |
CK262438 | 294 | 48 | 341 | 0 |
HO778688 | 333 | 48 | 380 | 0 |
EL465440 | 295 | 48 | 342 | 0 |
GW721137 | 286 | 57 | 342 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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