| Basic Information | |
|---|---|
| Species | Picea abies |
| Cazyme ID | MA_10431579g0010 |
| Family | GH28 |
| Protein Properties | Length: 373 Molecular Weight: 39692.3 Isoelectric Point: 4.6937 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 214 | 356 | 2.2e-39 |
| TIGSLGKYNATDTVSDVVVNRASLSGTQNGLRIKTWQGGSGYAQGIIFQHVKMINVSNPIIIDQYYCAGSSRCNQPAPCNNQTSAVQVNNVTYTGITGTS ATQEAIKLACSATVPCTNIVLEDISLQLNNGDTPSSLSANVQG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 373 Download |
| MHVDGEVATA VDNVDADAQM EWQWIMWMGM VSLLFCTGFS TEERSAFNSD RRRVEAPLIK 60 SSDLDPSAAV FSVDSYGAKG NGVSDDSQAF LAAWNAACTS SSDSIFLVPH GNSYLVKPIS 120 FNGPCNTGGL TAQISGRIVA PADPCNWNPE ERTIWLQFSK ARNGGQVLAA EIIDGSGEKW 180 WAGSCSRDQN QVCLSVPFAF VVNSSSNVHL RDLTIGSLGK YNATDTVSDV VVNRASLSGT 240 QNGLRIKTWQ GGSGYAQGII FQHVKMINVS NPIIIDQYYC AGSSRCNQPA PCNNQTSAVQ 300 VNNVTYTGIT GTSATQEAIK LACSATVPCT NIVLEDISLQ LNNGDTPSSL SANVQGSSTG 360 QVIPPVHFSS PSL 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 6.0e-30 | 33 | 215 | 184 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-35 | 203 | 364 | 170 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-38 | 213 | 351 | 139 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 8.0e-43 | 67 | 365 | 382 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 6.0e-55 | 201 | 370 | 178 | + Probable polygalacturonase | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK23977.1 | 0 | 30 | 231 | 17 | 217 | unknown [Picea sitchensis] |
| GenBank | ABK23977.1 | 0 | 201 | 373 | 260 | 440 | unknown [Picea sitchensis] |
| GenBank | ABK26513.1 | 0 | 26 | 215 | 13 | 188 | unknown [Picea sitchensis] |
| GenBank | ACN40008.1 | 0 | 30 | 231 | 17 | 217 | unknown [Picea sitchensis] |
| GenBank | ACN40008.1 | 0 | 201 | 373 | 260 | 440 | unknown [Picea sitchensis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.000007 | 213 | 279 | 253 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 0.00002 | 217 | 357 | 223 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 2iq7_G | 0.00002 | 200 | 331 | 179 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.00002 | 200 | 331 | 179 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.00002 | 200 | 331 | 179 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX377686 | 221 | 30 | 245 | 0 |
| DR496235 | 202 | 30 | 231 | 0 |
| DR526275 | 202 | 30 | 231 | 0 |
| DR525865 | 202 | 30 | 231 | 0 |
| DR524664 | 202 | 30 | 231 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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