Basic Information | |
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Species | Picea abies |
Cazyme ID | MA_104339g0010 |
Family | GH28 |
Protein Properties | Length: 469 Molecular Weight: 50775 Isoelectric Point: 8.7897 |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 92 | 440 | 0 |
RRGGTLLYIPSGVWLTGTFNLTSHMTLYLAKNAVLKASQDTDEWPVIDPLPSYGRGRELPGRRYISFIHGDGLEDVVITGENGTIDGQGQVWWNMWRDGT LKYTRGGLVELMNSKDVIVSNIVLLNSPFWNVHPVYSSNVVVRGLTIIAPRDSPNTDGVDPDSSSNVCIEDCHVSNGDDLVAIKSGWDEYGIAFGRPSSN IIVRRITGTTPFAGIAIGSETSGGIRDILVENVNIYGSSVGIRVKTNAGRGGIIRNITFSEIYLDNVTTAIKFSGNTGDHPDAGYNPLALPVVGDIAVLN VVGKNIKTAGSIVGLKASPILNICLANIHLRGKVPGFSGYSWNCTDVEG |
Full Sequence |
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Protein Sequence Length: 469 Download |
MVIPVAMWSP KMLRVIFLLV LIQWGFVVSY GRKGFSGGVW VQPGEKTCIG IVQMKHRQNV 60 VSIRYFGAVG DGKTLNTNAF RTAISHIQNL NRRGGTLLYI PSGVWLTGTF NLTSHMTLYL 120 AKNAVLKASQ DTDEWPVIDP LPSYGRGREL PGRRYISFIH GDGLEDVVIT GENGTIDGQG 180 QVWWNMWRDG TLKYTRGGLV ELMNSKDVIV SNIVLLNSPF WNVHPVYSSN VVVRGLTIIA 240 PRDSPNTDGV DPDSSSNVCI EDCHVSNGDD LVAIKSGWDE YGIAFGRPSS NIIVRRITGT 300 TPFAGIAIGS ETSGGIRDIL VENVNIYGSS VGIRVKTNAG RGGIIRNITF SEIYLDNVTT 360 AIKFSGNTGD HPDAGYNPLA LPVVGDIAVL NVVGKNIKTA GSIVGLKASP ILNICLANIH 420 LRGKVPGFSG YSWNCTDVEG SSIGVTPAPC PQLQRPGSSF CYNVFHRPN |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-26 | 61 | 423 | 385 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 1.0e-28 | 50 | 451 | 423 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 2.0e-29 | 51 | 448 | 416 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 4.0e-32 | 158 | 450 | 304 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 3.0e-58 | 60 | 379 | 343 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91250.1 | 0 | 45 | 465 | 25 | 444 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
EMBL | CBI34471.1 | 0 | 41 | 459 | 23 | 440 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_194113.1 | 0 | 45 | 465 | 25 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_199002.1 | 0 | 47 | 454 | 31 | 436 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002509949.1 | 0 | 41 | 453 | 22 | 433 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 8.96831e-44 | 61 | 423 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 8.96831e-44 | 61 | 423 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 8.96831e-44 | 61 | 423 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 8.96831e-44 | 61 | 423 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 6e-21 | 82 | 362 | 24 | 308 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |