Basic Information | |
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Species | Picea abies |
Cazyme ID | MA_10434427g0010 |
Family | AA3 |
Protein Properties | Length: 454 Molecular Weight: 49643.9 Isoelectric Point: 6.8348 |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 59 | 452 | 0 |
AARRYDYIVVGGGAAGCPLAATLSTRDGLVEAGVLPYNGYTLDHLDGTKISASIFDSKGKRHTAADLLKSANPDNIVVLLNATVSRVLFNSPAEETKDGS SQKPRASGVEFMDGHGRSYQVFLNESSRSSKDFGQNGSKILEEKPKGPEVILTAGALGSPQLLLLSGIGPSKHLREFNIPLVLDLPLVGQRIQDNPIASV TCKSHHFYYQQIVGITQFSQNYIEPPSIFVNGSASPHGRNEYNISIFEKLAFPLSRGELRLRSRDPRDNPSVRYNYYSHPLDFQRCVQGVSVIAQLLNTP SLRRSNASCFHGSPINMSDDAAMAQICRDTLSTVWHYHGGCEVGYVVNERYQVNGVDNLRIVDGSTYRDSPGTNPQATTMMLGRYMGVKILQEQ |
Full Sequence |
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Protein Sequence Length: 454 Download |
MFSASHDAHD DEQQSALCFL LLTMLTMMSS NQLFSSSQAA TTPSGFPFAF MTVDGERAAA 60 RRYDYIVVGG GAAGCPLAAT LSTRDGLVEA GVLPYNGYTL DHLDGTKISA SIFDSKGKRH 120 TAADLLKSAN PDNIVVLLNA TVSRVLFNSP AEETKDGSSQ KPRASGVEFM DGHGRSYQVF 180 LNESSRSSKD FGQNGSKILE EKPKGPEVIL TAGALGSPQL LLLSGIGPSK HLREFNIPLV 240 LDLPLVGQRI QDNPIASVTC KSHHFYYQQI VGITQFSQNY IEPPSIFVNG SASPHGRNEY 300 NISIFEKLAF PLSRGELRLR SRDPRDNPSV RYNYYSHPLD FQRCVQGVSV IAQLLNTPSL 360 RRSNASCFHG SPINMSDDAA MAQICRDTLS TVWHYHGGCE VGYVVNERYQ VNGVDNLRIV 420 DGSTYRDSPG TNPQATTMML GRYMGVKILQ EQAE |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG2303 | BetA | 0.0007 | 57 | 91 | 38 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 8.0e-8 | 63 | 109 | 49 | + Protein HOTHEAD | ||
TIGR01810 | betA | 9.0e-32 | 190 | 453 | 309 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
COG2303 | BetA | 2.0e-33 | 116 | 453 | 376 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 4.0e-120 | 84 | 452 | 426 | + Protein HOTHEAD |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK22756.1 | 0 | 170 | 453 | 1 | 291 | unknown [Picea sitchensis] |
GenBank | ABK25456.1 | 4e-34 | 18 | 104 | 11 | 99 | unknown [Picea sitchensis] |
GenBank | ABK25456.1 | 0 | 82 | 454 | 185 | 558 | unknown [Picea sitchensis] |
RefSeq | XP_002446965.1 | 0 | 55 | 452 | 153 | 584 | hypothetical protein SORBIDRAFT_06g025960 [Sorghum bicolor] |
RefSeq | XP_002446965.1 | 0.004 | 63 | 131 | 51 | 123 | hypothetical protein SORBIDRAFT_06g025960 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3gdp_B | 0 | 83 | 453 | 158 | 518 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
PDB | 3gdp_B | 0.0004 | 48 | 94 | 14 | 60 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
PDB | 3gdp_A | 0 | 83 | 453 | 158 | 518 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
PDB | 3gdp_A | 0.0004 | 48 | 94 | 14 | 60 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
PDB | 3gdn_B | 0 | 83 | 453 | 158 | 518 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO368210 | 299 | 107 | 404 | 0 |
DR576847 | 235 | 220 | 454 | 0 |
FD731099 | 230 | 212 | 441 | 0 |
DR480543 | 222 | 233 | 454 | 0 |
ES866027 | 213 | 242 | 454 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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