| Basic Information | |
|---|---|
| Species | Picea abies |
| Cazyme ID | MA_10435166g0010 |
| Family | GH28 |
| Protein Properties | Length: 549 Molecular Weight: 61727.4 Isoelectric Point: 8.4554 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 205 | 524 | 0 |
| NEGGQLNVQAGVWLTAPFNLTSHMTLFLAEDAVILGVEDEKYWPLMPPLPSYGYGREHPGPRYGSLIHGQHLHDVVITGYNGTIDGQGQSWWKKFRQKQM THTRGLLVQFMWCSDIEISNITLRNSPFWTLHPYDCQNVIISGLTILAPLDAPNTDGIDPDSCQNVTIENCYISVGDDCIAIKSGWDQYGIAYARPSANI VIRNLMLRSRVSAAVSIGSEMSGGVSNVTVDNILVWQSRRGMRIKTSPGRGGYVREISYRNLTFDTVRVGIVIKTDYPEHPDEKYDPKALPTVENIIYHG LRGREGRAIGNIFPRPCENL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 549 Download |
| MINPAFPLNH IWLKILVLSN WPCVAGQISR LTPXLPAFRV NNDQAWGRDG GALIDRDPRG 60 GEVLVFRGLG SVQHRKGVDF VDVLTAKNTH FCHLIKRSIG GMFEHSEMIR LQQQKSFLRR 120 GVSGCFSSYR NWFILLWVVG FGSVFLWQRN IVEGIRFFKL NIPRPIPRLR PHVFNLTDFG 180 GVGDGVWMNT KAFEDAVAAI AKLGNEGGQL NVQAGVWLTA PFNLTSHMTL FLAEDAVILG 240 VEDEKYWPLM PPLPSYGYGR EHPGPRYGSL IHGQHLHDVV ITGYNGTIDG QGQSWWKKFR 300 QKQMTHTRGL LVQFMWCSDI EISNITLRNS PFWTLHPYDC QNVIISGLTI LAPLDAPNTD 360 GIDPDSCQNV TIENCYISVG DDCIAIKSGW DQYGIAYARP SANIVIRNLM LRSRVSAAVS 420 IGSEMSGGVS NVTVDNILVW QSRRGMRIKT SPGRGGYVRE ISYRNLTFDT VRVGIVIKTD 480 YPEHPDEKYD PKALPTVENI IYHGLRGREG RAIGNIFPRP CENLALYDDY GRLVRPATMS 540 NESTIDYDF 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-25 | 283 | 526 | 256 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 8.0e-27 | 173 | 528 | 374 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 2.0e-31 | 172 | 528 | 370 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-40 | 271 | 507 | 250 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 5.0e-66 | 173 | 492 | 344 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN69988.1 | 0 | 111 | 549 | 12 | 509 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002277239.1 | 0 | 111 | 549 | 12 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002324728.1 | 0 | 110 | 549 | 12 | 495 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002326133.1 | 0 | 110 | 549 | 12 | 495 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516244.1 | 0 | 102 | 549 | 2 | 494 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 5.99994e-41 | 167 | 511 | 21 | 387 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 5.99994e-41 | 167 | 511 | 21 | 387 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 5.99994e-41 | 167 | 511 | 21 | 387 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 5.99994e-41 | 167 | 511 | 21 | 387 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 7e-20 | 205 | 503 | 37 | 331 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
