| Basic Information | |
|---|---|
| Species | Picea abies |
| Cazyme ID | MA_10436451g0020 |
| Family | GH28 |
| Protein Properties | Length: 243 Molecular Weight: 26451.8 Isoelectric Point: 4.8927 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 8 | 195 | 8.5e-41 |
| DSCSYVRIEDCYVVSGDDIIAIKSGWDEYGISFGMPSQHIVIRRVVGISPTSAIIALGSEMSGGIQDVRAEDIQAIDSEAGIRIKSAPGRGGFVRDIFVN RMTMVNMKWAFTMTGSYGSRPHPDDKYDPNALPVVERISYSNIVATNVSVAGKLEGIAKAPYKDICLSNVTITMAKSKNDPWNCTYIQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 243 Download |
| MFSPSYADSC SYVRIEDCYV VSGDDIIAIK SGWDEYGISF GMPSQHIVIR RVVGISPTSA 60 IIALGSEMSG GIQDVRAEDI QAIDSEAGIR IKSAPGRGGF VRDIFVNRMT MVNMKWAFTM 120 TGSYGSRPHP DDKYDPNALP VVERISYSNI VATNVSVAGK LEGIAKAPYK DICLSNVTIT 180 MAKSKNDPWN CTYIQGFSNA VYPQPCSLLE ERPAAGDALC PSPQELNTTE ENSLQHCTYS 240 SSH 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 0.0008 | 9 | 206 | 215 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 1.0e-5 | 13 | 199 | 192 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 6.0e-6 | 9 | 203 | 200 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-9 | 9 | 194 | 199 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-22 | 8 | 133 | 126 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABR18040.1 | 0 | 8 | 243 | 238 | 472 | unknown [Picea sitchensis] |
| GenBank | ACG41831.1 | 0 | 8 | 239 | 206 | 433 | glycoside hydrolase, family 28 [Zea mays] |
| DDBJ | BAD67712.1 | 0 | 8 | 240 | 252 | 480 | putative polygalacturonase [Oryza sativa Japonica Group] |
| RefSeq | XP_002299511.1 | 0 | 8 | 243 | 245 | 479 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002437680.1 | 0 | 8 | 239 | 255 | 482 | hypothetical protein SORBIDRAFT_10g000660 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 5e-21 | 8 | 183 | 244 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 5e-21 | 8 | 183 | 244 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 5e-21 | 8 | 183 | 244 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 5e-21 | 8 | 183 | 244 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX440969 | 236 | 8 | 243 | 0 |
| GT739403 | 236 | 8 | 243 | 0 |
| CO486701 | 236 | 8 | 243 | 0 |
| CO486693 | 236 | 8 | 243 | 0 |
| GT739820 | 230 | 8 | 237 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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