| Basic Information | |
|---|---|
| Species | Picea abies |
| Cazyme ID | MA_127755g0010 |
| Family | GH28 |
| Protein Properties | Length: 464 Molecular Weight: 50375 Isoelectric Point: 7.1901 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 74 | 405 | 0 |
| SKACSSAPAVFLVPHGKRYLVKPIKFSGPCKSALTMQVSGTIIAPADPRVWDGLNRRQWLRFKEVDDLTVEGGGTIYGSGEQWWAESCKINKTNPCRPAP TAITFELCNNLRVMNLIVENSQQMHIKFRKCVRVKADNLKVLAPGHSPNTDGIHVSASKDVVIKNTITGTGDDCISIVSDSFNIYIENITCGPGHGISIG SLGEGSAKARVADVMVHGAFLHNTTNGLRIKTWQGSSGSARRILFQNVHMENVKHPIIIDQYYCDSKKPCSNKTSAVKVSEVAYLNIKGTSASKEVMRFA CSQTVPCENILLADIDLTATSGCTPTTYCENA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 464 Download |
| NHQGRVSPSS VETENCTPLA QTIDLAGQFN NEDKSNSEMN NWVPRSSNVV CVDEFGAKGD 60 GENDDTKAFN NAWSKACSSA PAVFLVPHGK RYLVKPIKFS GPCKSALTMQ VSGTIIAPAD 120 PRVWDGLNRR QWLRFKEVDD LTVEGGGTIY GSGEQWWAES CKINKTNPCR PAPTAITFEL 180 CNNLRVMNLI VENSQQMHIK FRKCVRVKAD NLKVLAPGHS PNTDGIHVSA SKDVVIKNTI 240 TGTGDDCISI VSDSFNIYIE NITCGPGHGI SIGSLGEGSA KARVADVMVH GAFLHNTTNG 300 LRIKTWQGSS GSARRILFQN VHMENVKHPI IIDQYYCDSK KPCSNKTSAV KVSEVAYLNI 360 KGTSASKEVM RFACSQTVPC ENILLADIDL TATSGCTPTT YCENAIGCTT GSVSPHSCLQ 420 NYNQKGIFEF GIPLEVALTS FVVSKPTLRY VDELLSIGGK EEGE 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 8.0e-94 | 52 | 421 | 373 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 5.0e-96 | 46 | 420 | 382 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-104 | 77 | 418 | 343 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 3.0e-124 | 45 | 415 | 374 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 0 | 44 | 419 | 377 | + Probable polygalacturonase | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABM67700.1 | 0 | 45 | 441 | 50 | 445 | polygalacturonase [Citrus sinensis] |
| GenBank | ABR18059.1 | 0 | 1 | 436 | 40 | 475 | unknown [Picea sitchensis] |
| EMBL | CBI36284.1 | 0 | 44 | 421 | 44 | 423 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_565232.1 | 0 | 44 | 421 | 47 | 426 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002281827.1 | 0 | 44 | 421 | 38 | 417 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1hg8_A | 2e-19 | 84 | 402 | 26 | 347 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1bhe_A | 3e-19 | 143 | 345 | 113 | 321 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 4e-18 | 54 | 407 | 25 | 355 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1ib4_B | 3e-17 | 140 | 404 | 73 | 332 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1ib4_A | 3e-17 | 140 | 404 | 73 | 332 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX392052 | 268 | 1 | 268 | 0 |
| ES874636 | 228 | 209 | 436 | 0 |
| DR489919 | 221 | 216 | 436 | 0 |
| GO363753 | 205 | 232 | 436 | 0 |
| GO363804 | 194 | 243 | 436 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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