y
Basic Information | |
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Species | Picea abies |
Cazyme ID | MA_13282g0010 |
Family | GH28 |
Protein Properties | Length: 394 Molecular Weight: 42105.4 Isoelectric Point: 8.369 |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 50 | 382 | 0 |
AWNAACASTRPSIVYVRKGKYLLNPVAFTGPCKNNNMTFQLVGGLFASTNNNLYSGYWLQFESVNRLTFEGGGYINAQGASWWAQSCTSNDVATPVSLIF FSSTNVIVRDIKSINSKHFHIAFLGCNRVEAKGLTIRAPEDSPNTDGIHVEQSSNVKIIGVNIGTGDDCVSIGPGCSNIFIHSVQCGPGHGISVGSLGKA SDNGVGVSDVTVEKASFSGTQNGFRIKTWQGGQGFAKNITFQNAKMVNVSNPIIIDQNYCPYSHSCSSQGSSAVAISGVSYTNITGTSATQVAISLSCAQ NVPCQGIELQNVELRYRIHGVESAQAQCQNAKG |
Full Sequence |
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Protein Sequence Length: 394 Download |
MRLHLFQFAF LFITWGVNSF HASQAVVFDV HKYGAKADGK TDNSKAFAAA WNAACASTRP 60 SIVYVRKGKY LLNPVAFTGP CKNNNMTFQL VGGLFASTNN NLYSGYWLQF ESVNRLTFEG 120 GGYINAQGAS WWAQSCTSND VATPVSLIFF SSTNVIVRDI KSINSKHFHI AFLGCNRVEA 180 KGLTIRAPED SPNTDGIHVE QSSNVKIIGV NIGTGDDCVS IGPGCSNIFI HSVQCGPGHG 240 ISVGSLGKAS DNGVGVSDVT VEKASFSGTQ NGFRIKTWQG GQGFAKNITF QNAKMVNVSN 300 PIIIDQNYCP YSHSCSSQGS SAVAISGVSY TNITGTSATQ VAISLSCAQN VPCQGIELQN 360 VELRYRIHGV ESAQAQCQNA KGTEKGVVQP HNCL 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 2.0e-89 | 1 | 394 | 400 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 8.0e-94 | 57 | 381 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-96 | 30 | 390 | 371 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-102 | 27 | 394 | 377 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-113 | 2 | 393 | 407 | + polygalacturonase/glycoside hydrolase family protein |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC64184.1 | 0 | 2 | 394 | 4 | 393 | endopolygalacturonase [Prunus persica] |
GenBank | ABC72324.1 | 0 | 2 | 394 | 4 | 393 | endo-polygalacturonase [Prunus persica] |
GenBank | ABD33834.1 | 0 | 2 | 394 | 4 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
GenBank | ABV32553.1 | 0 | 2 | 394 | 4 | 393 | endopolygalacturonase [Prunus persica] |
RefSeq | XP_002529090.1 | 0 | 2 | 394 | 5 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-23 | 119 | 363 | 122 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 7e-18 | 29 | 383 | 22 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 1e-16 | 103 | 340 | 58 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-16 | 103 | 340 | 58 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-16 | 103 | 340 | 58 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |