| Basic Information | |
|---|---|
| Species | Picea abies |
| Cazyme ID | MA_133473g0010 |
| Family | GH28 |
| Protein Properties | Length: 450 Molecular Weight: 48626.5 Isoelectric Point: 5.763 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 106 | 439 | 0 |
| EVCSSSRSVFRVPEGKTYLVKPVTFSGPCHSALTVQVLGKIVAPKDPSVWNGLNPRLWLHFYGVDDLSVEGGGTIDGNGEEWWNKSCKINKSNPCSSAPT ALTFESINNLRVRNLHVQNSQQMHMAFQRCFAVQAINVRVTAPEHSPNTDGIHVTASKYVVIKHSTIGTGDDCISIVSGSVNVRAQNVTCGPGHGISIGS LGEGNSEAQVSNIMVDGAYLHDTTNGLRIKTWQGGSGFARGITFKNVKMENVSNPIIIDQNYCDSQKPCAKQDSAVKVSNVLYRNVKGTTPTKEAIKFEC SESVGCQGIVLQNVHLMMNSGDTPTAHCENVTGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 450 Download |
| MNPPSGQDTV CAVSHVKESG EDKYDPSTRM GSEECPPLKS QDETMTCIDE DMNVDTDETM 60 LDAQRSTEIL NYLTKSSAKV VLVDEFGAKG DGATDDTEAF ERAWKEVCSS SRSVFRVPEG 120 KTYLVKPVTF SGPCHSALTV QVLGKIVAPK DPSVWNGLNP RLWLHFYGVD DLSVEGGGTI 180 DGNGEEWWNK SCKINKSNPC SSAPTALTFE SINNLRVRNL HVQNSQQMHM AFQRCFAVQA 240 INVRVTAPEH SPNTDGIHVT ASKYVVIKHS TIGTGDDCIS IVSGSVNVRA QNVTCGPGHG 300 ISIGSLGEGN SEAQVSNIMV DGAYLHDTTN GLRIKTWQGG SGFARGITFK NVKMENVSNP 360 IIIDQNYCDS QKPCAKQDSA VKVSNVLYRN VKGTTPTKEA IKFECSESVG CQGIVLQNVH 420 LMMNSGDTPT AHCENVTGST RGTVFPAACF 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 5.0e-100 | 83 | 450 | 371 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-104 | 71 | 449 | 384 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-112 | 108 | 437 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 2.0e-137 | 81 | 446 | 369 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 0 | 76 | 450 | 376 | + Probable polygalacturonase | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAA32914.1 | 0 | 81 | 450 | 85 | 453 | polygalacturonase [Persea americana] |
| GenBank | ABD28401.1 | 0 | 58 | 450 | 36 | 429 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| GenBank | ABM67700.1 | 0 | 77 | 450 | 51 | 425 | polygalacturonase [Citrus sinensis] |
| GenBank | ABR18059.1 | 0 | 43 | 450 | 51 | 458 | unknown [Picea sitchensis] |
| RefSeq | XP_002299601.1 | 0 | 76 | 450 | 47 | 428 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 8e-25 | 174 | 367 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 4e-20 | 164 | 436 | 62 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 4e-20 | 164 | 436 | 62 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 4e-20 | 164 | 436 | 62 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 4e-20 | 164 | 436 | 62 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EE093402 | 249 | 163 | 411 | 0 |
| EX392052 | 257 | 43 | 299 | 0 |
| EC954904 | 292 | 52 | 342 | 0 |
| EE091344 | 245 | 179 | 423 | 0 |
| EH769463 | 255 | 87 | 340 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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