Basic Information | |
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Species | Picea abies |
Cazyme ID | MA_177334g0010 |
Family | GH20 |
Protein Properties | Length: 170 Molecular Weight: 19135.5 Isoelectric Point: 4.2521 |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH20 | 4 | 131 | 3.1e-27 |
YDGYEYFVLRAQELAITQGWTPVNWEETFNAFSERLNPNTVVHNWLGSGVCPRAVAKGFKCIFSNQGVWYLDHLDVPWEKVYSSDPLEGIADASQQQLVI GGEVCMWGETADASDIQQTIWPRAAAAA |
Full Sequence |
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Protein Sequence Length: 170 Download |
MTAYDGYEYF VLRAQELAIT QGWTPVNWEE TFNAFSERLN PNTVVHNWLG SGVCPRAVAK 60 GFKCIFSNQG VWYLDHLDVP WEKVYSSDPL EGIADASQQQ LVIGGEVCMW GETADASDIQ 120 QTIWPRAAAA AGMDSQCGRH ISVEFKVFNW YSSGIGNEIC VKFEQFECIF |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
cd06570 | GH20_chitobiase-like_1 | 7.0e-14 | 9 | 131 | 123 | + A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. |
cd02742 | GH20_hexosaminidase | 1.0e-14 | 9 | 131 | 132 | + Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself. |
cd06568 | GH20_SpHex_like | 2.0e-15 | 2 | 131 | 147 | + A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. |
pfam00728 | Glyco_hydro_20 | 9.0e-24 | 9 | 131 | 140 | + Glycosyl hydrolase family 20, catalytic domain. This domain has a TIM barrel fold. |
cd06562 | GH20_HexA_HexB-like | 4.0e-41 | 5 | 131 | 134 | + Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in Tay-Sachs, mutations in the beta-subunit cause in a deficiency in both HexA and HexB enzymes and result in Sandhoff disease. In both disorders GM(2) gangliosides accumulate in lysosomes. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABR16487.1 | 0 | 1 | 170 | 368 | 526 | unknown [Picea sitchensis] |
RefSeq | NP_001147583.1 | 0 | 1 | 131 | 357 | 487 | LOC100281192 [Zea mays] |
RefSeq | XP_002316315.1 | 0 | 1 | 131 | 343 | 473 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002440479.1 | 0 | 1 | 131 | 358 | 488 | hypothetical protein SORBIDRAFT_09g001670 [Sorghum bicolor] |
RefSeq | XP_002531964.1 | 0 | 1 | 170 | 23 | 183 | beta-hexosaminidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2gjx_G | 8e-16 | 9 | 131 | 337 | 461 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 2gjx_F | 8e-16 | 9 | 131 | 337 | 461 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 2gjx_C | 8e-16 | 9 | 131 | 337 | 461 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 2gjx_B | 8e-16 | 9 | 131 | 337 | 461 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 1np0_B | 8e-16 | 9 | 131 | 337 | 461 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DR516582 | 170 | 1 | 170 | 0 |
EX382482 | 131 | 1 | 131 | 0 |
EX374516 | 170 | 1 | 170 | 0 |
EX374882 | 170 | 1 | 170 | 0 |
EX314816 | 169 | 2 | 170 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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