y
Basic Information | |
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Species | Picea abies |
Cazyme ID | MA_17799g0010 |
Family | GH13 |
Protein Properties | Length: 514 Molecular Weight: 57959.4 Isoelectric Point: 5.1329 |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH13 | 122 | 422 | 5.3e-38 |
KSKVNDLVEAGVTDVWFPPPSHSVAPQGYMPCKLYDLDASRYGNEEKLKEAIEAYHVKGIRCIADIVINHRCGDAQDERGVWCIFEGGTPDERLDWGPWA IVKHDHPYSDGSGQPDTGEDFGAAPDIDHTNERVQTELANWMRWLYSDIGFDSWRFDFAKGYAGFYVGLYISMTLTDPLQFSVGELWNSLCYAPDGRPDH NQDPHRQELVNWVHATGDRCAAFDFTTKGILQEAVHGELWRLRDSNNKPPGMIGYWPEKAVTFVDNHDTGSTQCHWPFPPHKVMLGYVYILTHPGIPCIF Y |
Full Sequence |
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Protein Sequence Length: 514 Download |
MSVEFCYSFY PVSPEVVVDI AAEPLVTSRR SGSSRLALPW DGVAAPLAFR PAPQRIPWTG 60 MKIKFKERRA LINAISSSVG VNSTQGNGSR GGNIPTDPLR IIMFQGFNWE SWKDPCWYDV 120 LKSKVNDLVE AGVTDVWFPP PSHSVAPQGY MPCKLYDLDA SRYGNEEKLK EAIEAYHVKG 180 IRCIADIVIN HRCGDAQDER GVWCIFEGGT PDERLDWGPW AIVKHDHPYS DGSGQPDTGE 240 DFGAAPDIDH TNERVQTELA NWMRWLYSDI GFDSWRFDFA KGYAGFYVGL YISMTLTDPL 300 QFSVGELWNS LCYAPDGRPD HNQDPHRQEL VNWVHATGDR CAAFDFTTKG ILQEAVHGEL 360 WRLRDSNNKP PGMIGYWPEK AVTFVDNHDT GSTQCHWPFP PHKVMLGYVY ILTHPGIPCI 420 FYDHFFDWGL GDKIKELVEI RRRNDIRANS NCTILVADGD LYMVSIDDNK LIVKIGPRFD 480 IGGLAPSSQD FDIVAVGHEY CVWEKKPKGV GECD 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK09441 | PRK09441 | 4.0e-38 | 102 | 479 | 464 | + cytoplasmic alpha-amylase; Reviewed | ||
PLN02784 | PLN02784 | 3.0e-133 | 102 | 506 | 408 | + alpha-amylase | ||
PLN02361 | PLN02361 | 4.0e-148 | 100 | 505 | 409 | + alpha-amylase | ||
cd11314 | AmyAc_arch_bac_plant_AmyA | 9.0e-167 | 102 | 451 | 353 | + Alpha amylase catalytic domain found in archaeal, bacterial, and plant Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes AmyA from bacteria, archaea, water fleas, and plants. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. | ||
PLN00196 | PLN00196 | 0 | 102 | 505 | 408 | + alpha-amylase; Provisional |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAN01149.1 | 0 | 102 | 506 | 17 | 416 | alpha-amylase precursor [Musa acuminata] |
GenBank | AAO11776.1 | 0 | 94 | 506 | 9 | 416 | alpha-amylase precursor [Musa acuminata] |
GenBank | ABK24434.1 | 0 | 96 | 505 | 37 | 443 | unknown [Picea sitchensis] |
RefSeq | XP_001754460.1 | 0 | 106 | 506 | 1 | 396 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001777583.1 | 0 | 106 | 505 | 16 | 410 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bg9_A | 0 | 102 | 505 | 2 | 402 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
PDB | 1ava_B | 0 | 102 | 505 | 2 | 402 | A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed |
PDB | 1ava_A | 0 | 102 | 505 | 2 | 402 | A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed |
PDB | 1amy_A | 0 | 102 | 505 | 2 | 402 | A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed |
PDB | 2qpu_C | 0 | 102 | 506 | 3 | 405 | A Chain A, Sugar Tongs Mutant S378p In Complex With Acarbose |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO476908 | 418 | 88 | 505 | 0 |
HO409542 | 417 | 97 | 511 | 0 |
HO420508 | 407 | 101 | 506 | 0 |
FD743295 | 298 | 131 | 427 | 0 |
DN950032 | 241 | 94 | 334 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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