Basic Information | |
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Species | Picea abies |
Cazyme ID | MA_203992g0010 |
Family | PL1 |
Protein Properties | Length: 422 Molecular Weight: 46355.3 Isoelectric Point: 6.9921 |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 146 | 334 | 0 |
AVIQTEPLWIVFERDMVIQLKEELIMNSYKTIDGRGVNVHIANGPCITVQYVHNIIIHGIHVHDCKPAGNAMVRDSPTHYGWRTICDGDGISIFGGSHIW VDHVSLSNCADGLIDAIMGSTAITISNNHFTHHNEVMLLGHSDSYAPDVNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEIQ |
Full Sequence |
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Protein Sequence Length: 422 Download |
MYKQSILTCV VLIGFLCIHG GGAAKTFGSL VAEDSIGQKE AAPAKGNANT TAVEKDPDSV 60 VQMVQRSIDN STARRELAYL SCGTGNPIDD CWRCDPDWES NRKRLADCVI GFGRDAIGGK 120 NGRIYLVTDP NDYDAVNPRP GTLRHAVIQT EPLWIVFERD MVIQLKEELI MNSYKTIDGR 180 GVNVHIANGP CITVQYVHNI IIHGIHVHDC KPAGNAMVRD SPTHYGWRTI CDGDGISIFG 240 GSHIWVDHVS LSNCADGLID AIMGSTAITI SNNHFTHHNE VMLLGHSDSY APDVNMQVTI 300 AFNHFGEGLV QRMPRCRHGY FHVVNNDYTH WEIQGNRFAA PKNNPFAKEV TKREDNNVAE 360 WKQWNWRSEG DMMLNGAYFT PSGAGASSAY AKASSLGARP SSLIGPLTQN AGVLSCRRGT 420 RC |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-23 | 118 | 328 | 227 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 7.0e-54 | 166 | 338 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-61 | 160 | 342 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK66161.1 | 0 | 67 | 422 | 1 | 368 | pectate lyase [Fragaria x ananassa] |
GenBank | ABK25017.1 | 0 | 4 | 422 | 5 | 436 | unknown [Picea sitchensis] |
GenBank | ABR17766.1 | 0 | 1 | 422 | 1 | 426 | unknown [Picea sitchensis] |
GenBank | ABR17909.1 | 0 | 1 | 422 | 1 | 429 | unknown [Picea sitchensis] |
RefSeq | XP_002297822.1 | 0 | 49 | 422 | 65 | 450 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 86 | 415 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 86 | 415 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-17 | 155 | 329 | 50 | 214 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000004 | 234 | 328 | 190 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.000000000004 | 164 | 328 | 71 | 246 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |