| Basic Information | |
|---|---|
| Species | Picea abies |
| Cazyme ID | MA_219076g0010 |
| Family | GH28 |
| Protein Properties | Length: 252 Molecular Weight: 26781.9 Isoelectric Point: 9.4177 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 8 | 239 | 0 |
| LRLSGNSNLVVRNISSINSRQAHITINDCNNVRVEGVKIKAPVDSINTDGIHLQSSNVLIRDTVVRTGDDCVSIGGGSSNIVIEGFTCGPGHGISVGSLG KGSVFEVVSNITVNGAVFNGTQNGVRIKTWEGGKGIATDLTFQNIKMKNTNNPIIIDQYYCPHGSCFTKGFGGTDVKISNVVFKNIIGTSSSKMAISLAC SKRVPCQGIKVENVKLSFKEQPAQAVCENIKG | |||
| Full Sequence |
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| Protein Sequence Length: 252 Download |
| MEKIIQTLRL SGNSNLVVRN ISSINSRQAH ITINDCNNVR VEGVKIKAPV DSINTDGIHL 60 QSSNVLIRDT VVRTGDDCVS IGGGSSNIVI EGFTCGPGHG ISVGSLGKGS VFEVVSNITV 120 NGAVFNGTQN GVRIKTWEGG KGIATDLTFQ NIKMKNTNNP IIIDQYYCPH GSCFTKGFGG 180 TDVKISNVVF KNIIGTSSSK MAISLACSKR VPCQGIKVEN VKLSFKEQPA QAVCENIKGI 240 AIGFVKPILV CK |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 9.0e-62 | 5 | 247 | 247 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 3.0e-66 | 8 | 247 | 241 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-70 | 8 | 238 | 232 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 2.0e-72 | 15 | 247 | 236 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 8.0e-79 | 7 | 247 | 246 | + polygalacturonase/glycoside hydrolase family protein | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABO71786.1 | 0 | 7 | 247 | 148 | 388 | polygalacturonase [Cucumis melo] |
| RefSeq | XP_002309718.1 | 0 | 7 | 247 | 148 | 388 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331621.1 | 0 | 7 | 247 | 152 | 392 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529090.1 | 0 | 7 | 247 | 149 | 389 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529091.1 | 0 | 7 | 247 | 148 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 5e-20 | 8 | 224 | 154 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 0.00000000000003 | 8 | 223 | 130 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1nhc_F | 0.0000000000004 | 54 | 237 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.0000000000004 | 54 | 237 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.0000000000004 | 54 | 237 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| DR553308 | 116 | 137 | 252 | 0 |
| EX932295 | 221 | 7 | 225 | 0 |
| EE255801 | 238 | 13 | 247 | 0 |
| EY134601 | 236 | 15 | 247 | 0 |
| EC946744 | 243 | 7 | 247 | 0 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Picea abies | MA_8561980g0010 | MA_463685g0010 | |||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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