| Basic Information | |
|---|---|
| Species | Picea abies |
| Cazyme ID | MA_219076g0010 |
| Family | GH28 |
| Protein Properties | Length: 252 Molecular Weight: 26781.9 Isoelectric Point: 9.4177 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 8 | 239 | 0 |
| LRLSGNSNLVVRNISSINSRQAHITINDCNNVRVEGVKIKAPVDSINTDGIHLQSSNVLIRDTVVRTGDDCVSIGGGSSNIVIEGFTCGPGHGISVGSLG KGSVFEVVSNITVNGAVFNGTQNGVRIKTWEGGKGIATDLTFQNIKMKNTNNPIIIDQYYCPHGSCFTKGFGGTDVKISNVVFKNIIGTSSSKMAISLAC SKRVPCQGIKVENVKLSFKEQPAQAVCENIKG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 252 Download |
| MEKIIQTLRL SGNSNLVVRN ISSINSRQAH ITINDCNNVR VEGVKIKAPV DSINTDGIHL 60 QSSNVLIRDT VVRTGDDCVS IGGGSSNIVI EGFTCGPGHG ISVGSLGKGS VFEVVSNITV 120 NGAVFNGTQN GVRIKTWEGG KGIATDLTFQ NIKMKNTNNP IIIDQYYCPH GSCFTKGFGG 180 TDVKISNVVF KNIIGTSSSK MAISLACSKR VPCQGIKVEN VKLSFKEQPA QAVCENIKGI 240 AIGFVKPILV CK 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 9.0e-62 | 5 | 247 | 247 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 3.0e-66 | 8 | 247 | 241 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-70 | 8 | 238 | 232 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 2.0e-72 | 15 | 247 | 236 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 8.0e-79 | 7 | 247 | 246 | + polygalacturonase/glycoside hydrolase family protein | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABO71786.1 | 0 | 7 | 247 | 148 | 388 | polygalacturonase [Cucumis melo] |
| RefSeq | XP_002309718.1 | 0 | 7 | 247 | 148 | 388 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331621.1 | 0 | 7 | 247 | 152 | 392 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529090.1 | 0 | 7 | 247 | 149 | 389 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529091.1 | 0 | 7 | 247 | 148 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 5e-20 | 8 | 224 | 154 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 0.00000000000003 | 8 | 223 | 130 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1nhc_F | 0.0000000000004 | 54 | 237 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.0000000000004 | 54 | 237 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.0000000000004 | 54 | 237 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DR553308 | 116 | 137 | 252 | 0 |
| EX932295 | 221 | 7 | 225 | 0 |
| EE255801 | 238 | 13 | 247 | 0 |
| EY134601 | 236 | 15 | 247 | 0 |
| EC946744 | 243 | 7 | 247 | 0 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Picea abies | MA_8561980g0010 | MA_463685g0010 | |||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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