Basic Information | |
---|---|
Species | Picea abies |
Cazyme ID | MA_228529g0010 |
Family | PL4 |
Protein Properties | Length: 166 Molecular Weight: 19796.3 Isoelectric Point: 7.702 |
View CDS |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL4 | 8 | 148 | 7.9e-39 |
FRQYGLWERYSEIFKDNDLIYTVGTSDWRRDWYFAHTCRIENDGSFRPATWQVKFQLRGMEQNSLYKLRLAIASSTNAAIQIRFNDENIYKPHFDTMQFG KDNAIARHGIHGLYHLFNIDVSGNWLVEGENTLYLTQRKVT |
Full Sequence |
---|
Protein Sequence Length: 166 Download |
MYTMDMWFRQ YGLWERYSEI FKDNDLIYTV GTSDWRRDWY FAHTCRIEND GSFRPATWQV 60 KFQLRGMEQN SLYKLRLAIA SSTNAAIQIR FNDENIYKPH FDTMQFGKDN AIARHGIHGL 120 YHLFNIDVSG NWLVEGENTL YLTQRKVTSP FTGVMYDYLR LEKVSS |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10317 | RGL4_C | 1.0e-47 | 16 | 162 | 149 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK22261.1 | 0 | 8 | 166 | 64 | 222 | unknown [Picea sitchensis] |
DDBJ | BAD10227.1 | 0 | 8 | 166 | 486 | 644 | putative MYST1 [Oryza sativa Japonica Group] |
GenBank | EEC84004.1 | 0 | 8 | 165 | 1027 | 1184 | hypothetical protein OsI_30207 [Oryza sativa Indica Group] |
GenBank | EEE69124.1 | 0 | 8 | 166 | 352 | 510 | hypothetical protein OsJ_28234 [Oryza sativa Japonica Group] |
RefSeq | NP_001062464.1 | 0 | 8 | 166 | 499 | 657 | Os08g0554100 [Oryza sativa (japonica cultivar-group)] |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
DR509343 | 159 | 8 | 166 | 0 |
DR510843 | 159 | 8 | 166 | 0 |
GR222706 | 159 | 8 | 166 | 0 |
HE629730 | 159 | 8 | 166 | 0 |
DR527497 | 151 | 8 | 158 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|