Basic Information | |
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Species | Picea abies |
Cazyme ID | MA_2550g0010 |
Family | PL4 |
Protein Properties | Length: 207 Molecular Weight: 23536.7 Isoelectric Point: 4.7746 |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 6 | 203 | 5e-39 |
VNLSIYTSHIVLDNGIVKVTLSKPQGTVTEIEYGGIDNMMETLNLESHRGYWDLNWSEPGGPLLSDSIEGREFSVVVQTEDQVEVSFVRNWDPSFQGTTQ IPLNIDIRYVLLSGYSGFYAYAIYKRPTGFPDCDLVQTRMVFRLRKDKFQYMAIADNKQRVMPIEDDRSPERCRTLAYPEAVLLTNPKNPALKGEVTT |
Full Sequence |
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Protein Sequence Length: 207 Download |
MELNGVNLSI YTSHIVLDNG IVKVTLSKPQ GTVTEIEYGG IDNMMETLNL ESHRGYWDLN 60 WSEPGGPLLS DSIEGREFSV VVQTEDQVEV SFVRNWDPSF QGTTQIPLNI DIRYVLLSGY 120 SGFYAYAIYK RPTGFPDCDL VQTRMVFRLR KDKFQYMAIA DNKQRVMPIE DDRSPERCRT 180 LAYPEAVLLT NPKNPALKGE VTTTRLS |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10320 | RGL4_N | 2.0e-30 | 13 | 195 | 189 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 9.0e-82 | 12 | 201 | 190 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC43029.1 | 0 | 1 | 201 | 44 | 243 | unknown protein [Arabidopsis thaliana] |
RefSeq | NP_172462.2 | 0 | 1 | 201 | 44 | 243 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002306520.1 | 0 | 17 | 201 | 1 | 184 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527352.1 | 0 | 1 | 201 | 1 | 200 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527353.1 | 0 | 1 | 201 | 1 | 203 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DT631325 | 197 | 1 | 197 | 0 |
DR682760 | 188 | 1 | 188 | 0 |
FS328914 | 201 | 1 | 201 | 0 |
JG579677 | 204 | 1 | 201 | 0 |
BY880726 | 185 | 17 | 201 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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