| Basic Information | |
|---|---|
| Species | Picea abies |
| Cazyme ID | MA_427851g0010 |
| Family | GH28 |
| Protein Properties | Length: 255 Molecular Weight: 26223.1 Isoelectric Point: 4.0258 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 1 | 182 | 0 |
| MIQNCTIATGDDCISIVTESSDIQINELICGPGHGISIGSLGKYNTKDTVSDVVVNGASLSGTQNGLRIKTWQGGSGYAQGIIFQHVKMINVSNPIIIDQ NYCAPSSPCQNQPTPICNNQSSAVQVNNVTYTDITGTSATQDAIKLACSATAPCTNIVLEDISLQLSNGDTASSLSANVQGS | |||
| Full Sequence |
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| Protein Sequence Length: 255 Download |
| MIQNCTIATG DDCISIVTES SDIQINELIC GPGHGISIGS LGKYNTKDTV SDVVVNGASL 60 SGTQNGLRIK TWQGGSGYAQ GIIFQHVKMI NVSNPIIIDQ NYCAPSSPCQ NQPTPICNNQ 120 SSAVQVNNVT YTDITGTSAT QDAIKLACSA TAPCTNIVLE DISLQLSNGD TASSLSANVQ 180 GSSNGQVTPP VNFSFTGTSA TQDAIKLACS ATAPCTNIVL EDISLQLNNG DTASSLSANV 240 QGSSNGQVTP PVNFS 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 2.0e-12 | 192 | 255 | 67 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-46 | 2 | 192 | 191 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-47 | 2 | 176 | 175 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 2.0e-68 | 2 | 204 | 203 | + Probable polygalacturonase | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK23977.1 | 0 | 1 | 194 | 245 | 436 | unknown [Picea sitchensis] |
| GenBank | ABK26513.1 | 0 | 1 | 194 | 232 | 425 | unknown [Picea sitchensis] |
| GenBank | ACN40008.1 | 0 | 1 | 194 | 245 | 436 | unknown [Picea sitchensis] |
| Swiss-Prot | P35336 | 0 | 2 | 189 | 274 | 453 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
| RefSeq | XP_002517603.1 | 0 | 2 | 202 | 222 | 414 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.000000000006 | 7 | 102 | 219 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 0.0000000004 | 1 | 182 | 187 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 2iq7_G | 0.000000003 | 11 | 164 | 176 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.000000003 | 11 | 164 | 176 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.000000003 | 11 | 164 | 176 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CO212349 | 194 | 1 | 194 | 0 |
| CO481654 | 194 | 1 | 194 | 0 |
| CO481414 | 194 | 1 | 194 | 0 |
| CO212349 | 61 | 195 | 255 | 3e-27 |
| CO481654 | 61 | 195 | 255 | 2e-26 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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