Basic Information | |
---|---|
Species | Picea abies |
Cazyme ID | MA_474372g0010 |
Family | PL1 |
Protein Properties | Length: 271 Molecular Weight: 30036.2 Isoelectric Point: 9.653 |
View CDS |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 2 | 196 | 0 |
VIQLKEEMVVNSFKTIDGRGVNVHIANGPCITLQDVNNVIIHSIHIHHCTPPNPVGRSPVRDSPSHFGLRSAADGDGISIISSTHIWIDHCSFSRCKDGL IDVVSGSTSITISNNFFTDHDKVLLLGNDNNNMQDKNMQVTIAYNHFGKDLGQRMPRCRRGEFHVVNNDYTHWQIYAIGGSGNPTILSEGNRFLA |
Full Sequence |
---|
Protein Sequence Length: 271 Download |
MVIQLKEEMV VNSFKTIDGR GVNVHIANGP CITLQDVNNV IIHSIHIHHC TPPNPVGRSP 60 VRDSPSHFGL RSAADGDGIS IISSTHIWID HCSFSRCKDG LIDVVSGSTS ITISNNFFTD 120 HDKVLLLGND NNNMQDKNMQ VTIAYNHFGK DLGQRMPRCR RGEFHVVNND YTHWQIYAIG 180 GSGNPTILSE GNRFLASTHK VVTKRLSKGG MQWNWISNDD LFLNGAVFVQ SGSVPEALRA 240 RSLKPMPGTR VEVITRNAGV LRCRKGRRGR C |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-23 | 77 | 260 | 199 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-59 | 6 | 194 | 212 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 6.0e-62 | 1 | 197 | 208 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK66161.1 | 0 | 1 | 267 | 95 | 366 | pectate lyase [Fragaria x ananassa] |
GenBank | ACF84425.1 | 0 | 1 | 266 | 1 | 271 | unknown [Zea mays] |
GenBank | ACN35280.1 | 0 | 1 | 266 | 1 | 271 | unknown [Zea mays] |
DDBJ | BAF01663.1 | 0 | 1 | 268 | 1 | 273 | pectate lyase like protein [Arabidopsis thaliana] |
RefSeq | XP_002526952.1 | 0 | 1 | 268 | 123 | 395 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 1 | 261 | 76 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 1 | 261 | 76 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 7e-22 | 1 | 196 | 56 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 2e-18 | 9 | 171 | 128 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1jta_A | 3e-17 | 16 | 259 | 90 | 357 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
DT556743 | 276 | 1 | 268 | 0 |
CO077987 | 276 | 1 | 268 | 0 |
CA922515 | 266 | 11 | 268 | 0 |
EX673937 | 275 | 1 | 268 | 0 |
CO104520 | 249 | 1 | 243 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|