Basic Information | |
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Species | Picea abies |
Cazyme ID | MA_476625g0010 |
Family | PL1 |
Protein Properties | Length: 442 Molecular Weight: 48464.4 Isoelectric Point: 4.9577 |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 86 | 285 | 0 |
WIIFQSDMVIQLKEELIMNSFKTIDGRGADVHIAHGACITIQYVTNIIIHGVSIHDCVQTGNALVRSTPEHYGLRTLSDGDGISIFGARYIWIDHCSLSN CNDGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSFVQDVIMQVTIAFNYFGEGLVQRMPRCRHGYFHVVNNQYAYWEMYAIGGSASPTINSEGNRFLA |
Full Sequence |
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Protein Sequence Length: 442 Download |
SINDSRRQLS YLSCGTGNPI DDCWRCDPNW QMNRQKLADC AIGFGREAIG GKGGQYYVVT 60 DSSDNDAVNP TPGTLRYGVI QDEPLWIIFQ SDMVIQLKEE LIMNSFKTID GRGADVHIAH 120 GACITIQYVT NIIIHGVSIH DCVQTGNALV RSTPEHYGLR TLSDGDGISI FGARYIWIDH 180 CSLSNCNDGL IDAIMGSTAI TISNNYFTHH NEVMLLGHSD SFVQDVIMQV TIAFNYFGEG 240 LVQRMPRCRH GYFHVVNNQY AYWEMYAIGG SASPTINSEG NRFLAPDDAN AKEVTKRLDA 300 GTDEWSQWNW RSAGDIMLNG AFFVPSGTGA DDSYALFFVP SGTGADDSYA LASSVGAKPA 360 DLVETITGEA GALQGGTQRS SGNGNNHMSV MFGFFLWAIV KYQLEAQLSL VLLSDTMAVP 420 VRAAHSMENV PWQIKVPCKK YI |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-27 | 50 | 283 | 248 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 9.0e-67 | 98 | 283 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 7.0e-76 | 92 | 287 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABR18471.1 | 0 | 1 | 390 | 76 | 451 | unknown [Picea sitchensis] |
EMBL | CAN76500.1 | 0 | 1 | 373 | 38 | 395 | hypothetical protein [Vitis vinifera] |
EMBL | CBI14899.1 | 0 | 1 | 373 | 38 | 395 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_567409.1 | 0 | 5 | 373 | 109 | 462 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002275781.1 | 0 | 1 | 373 | 93 | 450 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 18 | 345 | 2 | 335 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 18 | 345 | 2 | 335 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-16 | 37 | 285 | 2 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.0000000000001 | 108 | 283 | 135 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.0000000000005 | 172 | 299 | 151 | 305 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FG606120 | 359 | 1 | 359 | 0 |
HO778688 | 368 | 6 | 373 | 0 |
DR120859 | 271 | 52 | 322 | 0 |
DY278910 | 342 | 1 | 342 | 0 |
EL457563 | 285 | 14 | 298 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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