| Basic Information | |
|---|---|
| Species | Picea abies |
| Cazyme ID | MA_62112g0010 |
| Family | PL1 |
| Protein Properties | Length: 314 Molecular Weight: 35119.7 Isoelectric Point: 7.63 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 60 | 198 | 0 |
| NAMVRNTPEHYGWRTVSDGDGISIFGGRYIWIDHCSLSNCKDGLIDAIMGSTAITISNNYFTHHDKVMLLGHSDSYVGDAIMQVTIAFNYFGEGLMQRMP RCRHGYFHIVNNHYAHWEMYAIGGSANPTINSEGNRFIA | |||
| Full Sequence |
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| Protein Sequence Length: 314 Download |
| MLDSFMGFLR GRPTIQVTEQ TRQHNSSFPV ETPDEVVKMV QKSINDSRRQ LSYLSCGTGN 60 AMVRNTPEHY GWRTVSDGDG ISIFGGRYIW IDHCSLSNCK DGLIDAIMGS TAITISNNYF 120 THHDKVMLLG HSDSYVGDAI MQVTIAFNYF GEGLMQRMPR CRHGYFHIVN NHYAHWEMYA 180 IGGSANPTIN SEGNRFIAPD NANAKQVTKR LNAVDEEWMR WNWRSAGDLM VNGAFFVPVG 240 AKSAFLVKTI TEDAGVLQSR THSSRSDDNT GRMSVSAAPM SILSAAHSHQ IIYFFLCALC 300 YVLKAFGHNF GFNC |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-24 | 59 | 196 | 151 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-57 | 62 | 196 | 143 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 6.0e-62 | 75 | 200 | 135 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABO28478.1 | 0 | 59 | 263 | 5 | 223 | pectate lyase precursor [Glycine max] |
| GenBank | ABR18471.1 | 2e-28 | 1 | 62 | 34 | 95 | unknown [Picea sitchensis] |
| GenBank | ABR18471.1 | 0 | 59 | 314 | 221 | 490 | unknown [Picea sitchensis] |
| GenBank | ACF84425.1 | 0 | 58 | 260 | 53 | 269 | unknown [Zea mays] |
| GenBank | ACN35280.1 | 0 | 58 | 258 | 53 | 267 | unknown [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 77 | 257 | 149 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 77 | 257 | 149 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.000000000000003 | 77 | 198 | 115 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.000000000000008 | 76 | 173 | 187 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1bn8_A | 0.00000000000006 | 79 | 173 | 205 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |
| Transmembrane Domains | ||||
|---|---|---|---|---|
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| Start | End | |||
| 290 | 312 | |||
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| DR100690 | 247 | 74 | 306 | 0 |
| ES878973 | 197 | 132 | 314 | 0 |
| ES259270 | 190 | 139 | 314 | 0 |
| DR120859 | 177 | 59 | 235 | 0 |
| DR019720 | 240 | 68 | 287 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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