| Basic Information | |
|---|---|
| Species | Picea abies |
| Cazyme ID | MA_63122g0010 |
| Family | GH28 |
| Protein Properties | Length: 343 Molecular Weight: 37211.1 Isoelectric Point: 8.3167 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 82 | 333 | 0 |
| AWNAACTSNSNSVFLVPYGKNYLIKPIILNGPCKTVDLAAQISGRIVAPADPSNWNRQDLRAWIKISKVQGLTVHGGGIIDGSGICGRMHLRDLTFQNSQ QIHVQIYRSTNVQVENLQIVAPGDSPNTDGIHVSASQHVVIQNCTIATGDDCVSIVTQSSDIQINKLICGPGHGISIGSLGKDNANDAVSDVVVNGASLT GTQNGLRIKSWQGGSGYAQGIIFQHVSMINVSNPIIIDQYYCDSQTPCLNQT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 343 Download |
| MVYYRNSDNL SLWMRICIVS LLLYTGFSTQ ERWSSFNSGR RRVEGRLIKS LNLNASAAVF 60 SVDSYGAKGD GDFDDSQAFL AAWNAACTSN SNSVFLVPYG KNYLIKPIIL NGPCKTVDLA 120 AQISGRIVAP ADPSNWNRQD LRAWIKISKV QGLTVHGGGI IDGSGICGRM HLRDLTFQNS 180 QQIHVQIYRS TNVQVENLQI VAPGDSPNTD GIHVSASQHV VIQNCTIATG DDCVSIVTQS 240 SDIQINKLIC GPGHGISIGS LGKDNANDAV SDVVVNGASL TGTQNGLRIK SWQGGSGYAQ 300 GIIFQHVSMI NVSNPIIIDQ YYCDSQTPCL NQTSPALRQR KMR 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-60 | 87 | 334 | 272 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 9.0e-65 | 51 | 322 | 289 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 2.0e-68 | 60 | 324 | 276 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 7.0e-73 | 61 | 334 | 302 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-92 | 56 | 334 | 305 | + Probable polygalacturonase | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK23977.1 | 0 | 2 | 334 | 1 | 364 | unknown [Picea sitchensis] |
| GenBank | ABK26513.1 | 0 | 5 | 332 | 4 | 343 | unknown [Picea sitchensis] |
| GenBank | ABR18059.1 | 0 | 56 | 334 | 85 | 387 | unknown [Picea sitchensis] |
| GenBank | ACN40008.1 | 0 | 2 | 334 | 1 | 364 | unknown [Picea sitchensis] |
| RefSeq | NP_173760.2 | 0 | 59 | 334 | 66 | 365 | polygalacturonase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-16 | 172 | 322 | 164 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 0.0000000000005 | 208 | 313 | 165 | 268 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 2iq7_G | 0.0000000003 | 171 | 322 | 112 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.0000000003 | 171 | 322 | 112 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.0000000003 | 171 | 322 | 112 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX438627 | 316 | 11 | 300 | 0 |
| DV987134 | 312 | 8 | 293 | 0 |
| EX368009 | 316 | 5 | 294 | 0 |
| EX393762 | 313 | 5 | 291 | 0 |
| EX426595 | 309 | 4 | 286 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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