| Basic Information | |
|---|---|
| Species | Picea abies |
| Cazyme ID | MA_640601g0010 |
| Family | GH28 |
| Protein Properties | Length: 475 Molecular Weight: 51030.8 Isoelectric Point: 8.202 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 74 | 395 | 0 |
| QAACSVESAIVEVPAEFRFLVGPISFSGPCQPSITFQIDGTIIAPVNPRAWGPAGMLQWIQFIKLNAITIQGCGVIDGRGSVWWGSSDCEISSQKGQQMP NIKPTALRFYGSIGVTVKDITIQNSPQCHLKFDSCTSVKVSSVTISSPWDSPNTDGIHLQNSQDVEIHHSSMACGDDCVSIQTGCSNVRVHNINCGPGHG ISIGGLGKDKTKACVSNITVYDSSIGDSLNGVRIKTWQGGMGSVKGVSFSNIQVSNVKIPIVIDQFYCDKSICSNQSSAVAISGVTYENIRGTYAYKAVH LACSDNVPCTEVVLTEIELHPV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 475 Download |
| KKKPGPPLKH PAPGRKQGSG SPPPSPGRKK GSGSPPVPSQ GYPKGYSNIF DVLSYGAKGD 60 GVTDDTKAFQ TAWQAACSVE SAIVEVPAEF RFLVGPISFS GPCQPSITFQ IDGTIIAPVN 120 PRAWGPAGML QWIQFIKLNA ITIQGCGVID GRGSVWWGSS DCEISSQKGQ QMPNIKPTAL 180 RFYGSIGVTV KDITIQNSPQ CHLKFDSCTS VKVSSVTISS PWDSPNTDGI HLQNSQDVEI 240 HHSSMACGDD CVSIQTGCSN VRVHNINCGP GHGISIGGLG KDKTKACVSN ITVYDSSIGD 300 SLNGVRIKTW QGGMGSVKGV SFSNIQVSNV KIPIVIDQFY CDKSICSNQS SAVAISGVTY 360 ENIRGTYAYK AVHLACSDNV PCTEVVLTEI ELHPVERILQ QPFWNFTRWN GSYSSHSAGK 420 LTAKLRTRRY HQYIVCMPET LTKTLVAYNQ TGMVASYHSL ISAAIGYCED GDGEW 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 7.0e-66 | 47 | 392 | 352 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03010 | PLN03010 | 4.0e-71 | 46 | 392 | 352 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-73 | 84 | 392 | 310 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 5.0e-80 | 52 | 392 | 346 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 5.0e-89 | 49 | 394 | 350 | + Probable polygalacturonase | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABV24998.1 | 0 | 46 | 397 | 84 | 438 | polygalacturonase 1 [Oncidium Gower Ramsey] |
| GenBank | ABV24999.1 | 0 | 46 | 397 | 85 | 439 | polygalacturonase 2 [Oncidium Gower Ramsey] |
| GenBank | ABV25000.1 | 0 | 46 | 397 | 85 | 439 | polygalacturonase 3 [Oncidium Gower Ramsey] |
| GenBank | ABV25002.1 | 0 | 49 | 397 | 89 | 440 | polygalacturonase 5 [Oncidium Gower Ramsey] |
| RefSeq | XP_002266600.1 | 0 | 21 | 397 | 65 | 461 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 6e-24 | 140 | 392 | 71 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 6e-24 | 140 | 392 | 71 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 6e-24 | 140 | 392 | 71 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 6e-24 | 140 | 392 | 71 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 6e-24 | 140 | 392 | 71 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DV997082 | 256 | 42 | 297 | 0 |
| DR581859 | 231 | 173 | 403 | 0 |
| CO212200 | 220 | 184 | 403 | 0 |
| CO212200 | 95 | 384 | 473 | 4e-34 |
| DR581859 | 95 | 384 | 473 | 8e-34 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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