Basic Information | |
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Species | Picea abies |
Cazyme ID | MA_66914g0010 |
Family | PL1 |
Protein Properties | Length: 381 Molecular Weight: 42892 Isoelectric Point: 7.364 |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 140 | 346 | 0 |
VIQSAPLWIIFQRGMLIKLQAELMVNSYKTIDGRGANVEMAYGPCITVQYVSHVIIHGLNIHDCVPSRSGMVKSSPYHTGYRQGSDGDGITVFGSSNVWI YHFMISHCIDGLIDVIHASSVITISNCHFYDHNKEILMGHDNSYKADKILKGMLTFNRFGPNLVQRMPRGRFDYFHVANNDYLAWNVYAIGGSLNPTIRS EGNKFMA |
Full Sequence |
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Protein Sequence Length: 381 Download |
MEKHSKVTMF FRILSVALLY LVWIEKYRYS ALAANITDML DVFPPLEISE GTELSSGLPL 60 NSSDATRRSL GPYYSYRVLN EIDACWRNDA NWAYHRQALA DCAIGFGSGA VGGKYGRIYT 120 VTDPGDDPVN PKFGTLRYGV IQSAPLWIIF QRGMLIKLQA ELMVNSYKTI DGRGANVEMA 180 YGPCITVQYV SHVIIHGLNI HDCVPSRSGM VKSSPYHTGY RQGSDGDGIT VFGSSNVWIY 240 HFMISHCIDG LIDVIHASSV ITISNCHFYD HNKEILMGHD NSYKADKILK GMLTFNRFGP 300 NLVQRMPRGR FDYFHVANND YLAWNVYAIG GSLNPTIRSE GNKFMAPTDS YRKEVTERER 360 WAEEVIGTGN LLMICFSMVY T |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 9.0e-20 | 161 | 345 | 197 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-51 | 161 | 344 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-60 | 154 | 347 | 205 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI23207.1 | 0 | 79 | 359 | 1 | 281 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_172656.1 | 0 | 80 | 358 | 37 | 315 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002263615.1 | 0 | 78 | 359 | 49 | 330 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002331545.1 | 0 | 57 | 359 | 23 | 325 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518442.1 | 0 | 72 | 359 | 36 | 323 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 80 | 358 | 2 | 282 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 80 | 358 | 2 | 282 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 0.00000000001 | 98 | 346 | 1 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 0.00000000006 | 157 | 345 | 71 | 277 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1bn8_A | 0.0000002 | 227 | 321 | 205 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |