| Basic Information | |
|---|---|
| Species | Picea abies |
| Cazyme ID | MA_754919g0010 |
| Family | GH28 |
| Protein Properties | Length: 436 Molecular Weight: 46379.9 Isoelectric Point: 4.4794 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 60 | 373 | 0 |
| AWNAACASSSSSVFLVPPGKNYLVKPISLNGPCRTGNMIAQVVGEISGTIVAPADPAAWNPQDISVWLKFSEVQGLTIEGGGIIDGSGQKWWDCKRDWAF VLDSSANVNLRDLTFQNSQQIHLEISLSTHVQVENLQIVAPDFSPNTDGIHVSASQHVVIQNCTIGTGDDCVSIVTQSSDIQINKLVCGPGHGISIGSLG ENNARDIVSDVVVNGATFTGTQNGLRIKTWQGGSGYAQGIIFEHVRMTNVSNPIIIDQYYCTSSTPCHNQVSNVIYRDITGTSALQDAIKLACSGTVPCT EIVMEDINLQLNNG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 436 Download |
| MLLYTGFSTQ ERLSVNTGRR RAEERVKKSL DLDAAAVFNV DSYGAYGDGA SDDSQSFLAA 60 WNAACASSSS SVFLVPPGKN YLVKPISLNG PCRTGNMIAQ VVGEISGTIV APADPAAWNP 120 QDISVWLKFS EVQGLTIEGG GIIDGSGQKW WDCKRDWAFV LDSSANVNLR DLTFQNSQQI 180 HLEISLSTHV QVENLQIVAP DFSPNTDGIH VSASQHVVIQ NCTIGTGDDC VSIVTQSSDI 240 QINKLVCGPG HGISIGSLGE NNARDIVSDV VVNGATFTGT QNGLRIKTWQ GGSGYAQGII 300 FEHVRMTNVS NPIIIDQYYC TSSTPCHNQV SNVIYRDITG TSALQDAIKL ACSGTVPCTE 360 IVMEDINLQL NNGDAATSLQ DAIKLACSGT VPCTEIVMED INLQLNNGDA ATSFVANAHG 420 SCQGQVIPPV TFSKSI 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 4.0e-82 | 38 | 376 | 345 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 2.0e-82 | 38 | 369 | 341 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-86 | 72 | 388 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 5.0e-96 | 32 | 369 | 356 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-119 | 37 | 435 | 415 | + Probable polygalacturonase | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC98004.1 | 0 | 37 | 373 | 65 | 409 | Similar to gb |
| GenBank | ABK23977.1 | 0 | 1 | 433 | 20 | 436 | unknown [Picea sitchensis] |
| GenBank | ABK26513.1 | 0 | 1 | 433 | 20 | 425 | unknown [Picea sitchensis] |
| GenBank | ACN40008.1 | 0 | 1 | 433 | 20 | 436 | unknown [Picea sitchensis] |
| RefSeq | XP_002328587.1 | 0 | 37 | 382 | 63 | 418 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-19 | 137 | 368 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 1e-17 | 135 | 354 | 71 | 323 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1rmg_A | 0.000000000000006 | 39 | 379 | 22 | 349 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1nhc_F | 0.00000000000002 | 135 | 346 | 72 | 294 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00000000000002 | 135 | 346 | 72 | 294 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DR050772 | 292 | 101 | 368 | 0 |
| EX438627 | 309 | 1 | 297 | 0 |
| EX340593 | 273 | 131 | 379 | 0 |
| EX314309 | 275 | 48 | 311 | 0 |
| DV987134 | 302 | 1 | 290 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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