| Basic Information | |
|---|---|
| Species | Picea abies |
| Cazyme ID | MA_88519g0010 |
| Family | GH28 |
| Protein Properties | Length: 472 Molecular Weight: 51878.5 Isoelectric Point: 5.8583 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 90 | 424 | 0 |
| ADKGGAQLFVPAGKWLTGSFNLTSHLTLYLDAGAVILGSQDSKDWPVISPLPSYGRGRELPGGRHCSLIHGYNLTDVVITGNNGTVDGQGAVWWNWFHNH TLNYTRPHLVELEDSQDIIIANLTFLNSPFWTIHPVYCSNVRVQNLTILAPLNSPNTDGIDPDSSSDVCIEDCYISVGDDVISIKSGWDEYGITYGRPSS NIIIRRVIGQTHTSSGLSLGSEMSGGIKGVHAQDLQIFNSRRGLRIKSAPGRGGYVKDVYISNVTMKNVSVGIVFTGLYGDHPDDRYDPNALPDIERITF KDIVGDEITTAGSVEGLQNAPFKDICLSNILFNVT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 472 Download |
| MKRFIIQVLL LVLSCISEVG LAFFQGRHET VREVKTFGSR SEQQGECKHN RAMPLRPHRV 60 TITEFGAVGD GVTLNTLAFQ NAIFYLNTFA DKGGAQLFVP AGKWLTGSFN LTSHLTLYLD 120 AGAVILGSQD SKDWPVISPL PSYGRGRELP GGRHCSLIHG YNLTDVVITG NNGTVDGQGA 180 VWWNWFHNHT LNYTRPHLVE LEDSQDIIIA NLTFLNSPFW TIHPVYCSNV RVQNLTILAP 240 LNSPNTDGID PDSSSDVCIE DCYISVGDDV ISIKSGWDEY GITYGRPSSN IIIRRVIGQT 300 HTSSGLSLGS EMSGGIKGVH AQDLQIFNSR RGLRIKSAPG RGGYVKDVYI SNVTMKNVSV 360 GIVFTGLYGD HPDDRYDPNA LPDIERITFK DIVGDEITTA GSVEGLQNAP FKDICLSNIL 420 FNVTSEPFWN CSYVGGFSES VYPEPCTQLQ PQIPHDSPVC YSSYVSSTCK DV 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 9.0e-24 | 4 | 419 | 431 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-24 | 51 | 446 | 416 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 3.0e-28 | 62 | 401 | 354 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-33 | 158 | 394 | 240 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-57 | 60 | 360 | 324 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU18828.1 | 0 | 55 | 461 | 38 | 444 | unknown [Glycine max] |
| EMBL | CBI37055.1 | 0 | 46 | 453 | 29 | 436 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002273855.1 | 0 | 47 | 453 | 81 | 487 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301554.1 | 0 | 47 | 464 | 30 | 447 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002535132.1 | 0 | 46 | 456 | 39 | 449 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 49 | 421 | 17 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 49 | 421 | 17 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 49 | 421 | 17 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 49 | 421 | 17 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 5e-25 | 104 | 395 | 52 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
