| Basic Information | |
|---|---|
| Species | Picea abies |
| Cazyme ID | MA_925858g0010 |
| Family | GH28 |
| Protein Properties | Length: 395 Molecular Weight: 41676.6 Isoelectric Point: 5.5898 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 54 | 383 | 0 |
| AWNAACASSSSSVFLVPQGKNYLVKPISLNGPCRTGNLIAQVVGEMSGTIVAPADPAAWNPQDLSAWLKFSNVQGLTIEGGGIIDGSGQKWWDCKRNKDK AFVIDSSANVNVRDLTFQNSQQVHVEIAFSTNVKVENLQIVAPGDSPNTDGIHITGSQHVVIQNCTIGTGDDCVSIVSQSSDIQIDKLICGPGHGISIGS LGGNNARATVSDVVVNGAALTGTKNGLRIKTWQGGSGYAKGITFQHVTMTNVSNPIIIDQYYCITSTPCHNQVSNVIYTDIRGTSATQDAIKLACSGTVP CTEIVMEDINLQLNNGDAATSFVANAHGSC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 395 Download |
| FSTQDQLSVN SGRRRAEERL KKTLDIDAAA VFSVDSYGAK GDGASDDSQS FLAAWNAACA 60 SSSSSVFLVP QGKNYLVKPI SLNGPCRTGN LIAQVVGEMS GTIVAPADPA AWNPQDLSAW 120 LKFSNVQGLT IEGGGIIDGS GQKWWDCKRN KDKAFVIDSS ANVNVRDLTF QNSQQVHVEI 180 AFSTNVKVEN LQIVAPGDSP NTDGIHITGS QHVVIQNCTI GTGDDCVSIV SQSSDIQIDK 240 LICGPGHGIS IGSLGGNNAR ATVSDVVVNG AALTGTKNGL RIKTWQGGSG YAKGITFQHV 300 TMTNVSNPII IDQYYCITST PCHNQVSNVI YTDIRGTSAT QDAIKLACSG TVPCTEIVME 360 DINLQLNNGD AATSFVANAH GSCQGQVIPP VTWRI 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 4.0e-75 | 32 | 365 | 341 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 2.0e-75 | 32 | 381 | 356 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-79 | 66 | 364 | 311 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 2.0e-92 | 26 | 389 | 379 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-118 | 14 | 390 | 391 | + Probable polygalacturonase | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC98004.1 | 0 | 31 | 389 | 65 | 428 | Similar to gb |
| GenBank | ABK23977.1 | 0 | 1 | 393 | 26 | 435 | unknown [Picea sitchensis] |
| GenBank | ABK26513.1 | 0 | 17 | 393 | 29 | 424 | unknown [Picea sitchensis] |
| GenBank | ABR18059.1 | 0 | 31 | 389 | 88 | 454 | unknown [Picea sitchensis] |
| GenBank | ACN40008.1 | 0 | 1 | 393 | 26 | 435 | unknown [Picea sitchensis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-21 | 131 | 364 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 5e-19 | 129 | 350 | 71 | 323 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 2iq7_G | 1e-17 | 80 | 315 | 21 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 1e-17 | 80 | 315 | 21 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 1e-17 | 80 | 315 | 21 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DR050772 | 292 | 95 | 364 | 0 |
| EX438627 | 287 | 17 | 293 | 0 |
| EX340593 | 279 | 126 | 382 | 0 |
| EX368009 | 281 | 17 | 287 | 0 |
| DV987134 | 280 | 17 | 286 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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