Basic Information | |
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Species | Picea abies |
Cazyme ID | MA_928735g0010 |
Family | PL1 |
Protein Properties | Length: 413 Molecular Weight: 46014.9 Isoelectric Point: 7.4424 |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 123 | 331 | 0 |
AVIQTEPLWIIFQRDMVIKLEEELIMNSFKTIDGRGASVYIGNKGPCFTVQNVTNIIIHGLYIQDCRPAGDHLVRDSPTHVGFRQIAEGDGITIFTARHI WVDHCSMTNCADGLIDVVESSTSITISNNYFTRHSKVMLFGHSDNYPEDRIMKVTVAFNHFGKGLSERMPRCRFGQFHIVNNDYTEWEDYAIGGSSNPTI LSQGNRFLA |
Full Sequence |
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Protein Sequence Length: 413 Download |
MGILCCVHGS ETLMGERKEA PPNLTSLDIQ NDPDGVAQIV REGSNKNGRK QGRDLAVLTC 60 GTGNPIDDCW RCDPNWESNR KRLADCGIGF GKDAIGGKYG KFYVVTDARD DPVNPANGTL 120 RHAVIQTEPL WIIFQRDMVI KLEEELIMNS FKTIDGRGAS VYIGNKGPCF TVQNVTNIII 180 HGLYIQDCRP AGDHLVRDSP THVGFRQIAE GDGITIFTAR HIWVDHCSMT NCADGLIDVV 240 ESSTSITISN NYFTRHSKVM LFGHSDNYPE DRIMKVTVAF NHFGKGLSER MPRCRFGQFH 300 IVNNDYTEWE DYAIGGSSNP TILSQGNRFL ASENPFVKEV TRREITVSIN VWKYWNWKSE 360 DDMLLNGANF TQSGSPRSIA YTGAYSVRPR SSAFVGQLTK NAGVISCRRG ARC 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 7.0e-30 | 150 | 404 | 270 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-70 | 144 | 329 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-74 | 137 | 332 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK66161.1 | 0 | 53 | 413 | 9 | 368 | pectate lyase [Fragaria x ananassa] |
GenBank | ABR17766.1 | 0 | 1 | 413 | 13 | 426 | unknown [Picea sitchensis] |
GenBank | ABR17909.1 | 0 | 1 | 413 | 13 | 429 | unknown [Picea sitchensis] |
GenBank | ABV32549.1 | 0 | 21 | 413 | 24 | 413 | pectase lyase [Prunus persica] |
RefSeq | NP_001141589.1 | 0 | 32 | 413 | 88 | 466 | hypothetical protein LOC100273705 [Zea mays] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 64 | 406 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 64 | 406 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-17 | 132 | 331 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 5e-17 | 166 | 329 | 146 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 7e-16 | 177 | 403 | 115 | 357 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778688 | 401 | 14 | 413 | 0 |
FG606120 | 348 | 32 | 378 | 0 |
GT740031 | 307 | 74 | 378 | 0 |
HO772321 | 291 | 54 | 343 | 0 |
EL457563 | 289 | 56 | 343 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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