| Basic Information | |
|---|---|
| Species | Picea abies |
| Cazyme ID | MA_9467735g0010 |
| Family | GH28 |
| Protein Properties | Length: 233 Molecular Weight: 25095.5 Isoelectric Point: 5.5307 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 17 | 206 | 3.89981e-42 |
| DSSSNVCIEDCYIRSGDDLVAIKSGWDEYGIAVGHPSSNIIIRRVTGTTPTCSGIGIGSEMSGGIEGVVVENLNIYNASAGVRVKTDIGRGGYITNITIS NITMENVKIPIKFTADSNDHPDSNWDPNALPLIKGIIIRDIVGKDIHNAPSFKGLHKTPFVDICISNIKLEGIPQGRTAWHCEFVEGVSA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 233 Download |
| MLGLSLTSEH ICLLCADSSS NVCIEDCYIR SGDDLVAIKS GWDEYGIAVG HPSSNIIIRR 60 VTGTTPTCSG IGIGSEMSGG IEGVVVENLN IYNASAGVRV KTDIGRGGYI TNITISNITM 120 ENVKIPIKFT ADSNDHPDSN WDPNALPLIK GIIIRDIVGK DIHNAPSFKG LHKTPFVDIC 180 ISNIKLEGIP QGRTAWHCEF VEGVSANVSP SPCSNFQTQD QMNVSYCTML RHT 240 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 0.0003 | 19 | 207 | 197 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-5 | 97 | 188 | 93 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-7 | 18 | 201 | 187 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 2.0e-7 | 18 | 210 | 206 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 2.0e-12 | 17 | 151 | 143 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI37530.1 | 0 | 17 | 227 | 269 | 476 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002274138.1 | 0 | 17 | 227 | 269 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002307030.1 | 0 | 17 | 217 | 193 | 392 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002310517.1 | 0 | 17 | 228 | 227 | 435 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526639.1 | 0 | 17 | 228 | 270 | 478 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 3e-18 | 17 | 188 | 244 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 3e-18 | 17 | 188 | 244 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 3e-18 | 17 | 188 | 244 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 3e-18 | 17 | 188 | 244 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.00002 | 18 | 186 | 208 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DT634835 | 143 | 91 | 233 | 0 |
| DR688373 | 143 | 91 | 233 | 0 |
| EX310452 | 123 | 111 | 233 | 0 |
| EX306355 | 123 | 111 | 233 | 0 |
| EX306023 | 123 | 111 | 233 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
