| Basic Information | |
|---|---|
| Species | Picea abies |
| Cazyme ID | MA_98717g0010 |
| Family | GH28 |
| Protein Properties | Length: 310 Molecular Weight: 34014.7 Isoelectric Point: 4.7356 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 74 | 308 | 0 |
| ETGGGQLYIPPGRWLTGSFNLTDHFTLYLHKEAVILGSQDLEDWPLIPPLPSYGMGRDAPGPRYSSLINGYNLTDVVITGDNGTIDGQGAIWWQKFHKNI LKNTRGYLVELMYSKDIIISNLTFLNSPAWNLHPVYSSNILIQYVTILAPLDSPNTDGIDPDSCSYVRIEDCYVVSGDDIVAIKSGWDEYGISFGMPSQH IVIRRLVGISPTSAIIALGSEMSGGIQDVRAEDIQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 310 Download |
| MEFKRSHVLL LLGCFILLGV KVECQKGSWS FSYVAPSCRA QSVSIAEFGG VGDGTTVNTE 60 AFRKAIEHLS EFSETGGGQL YIPPGRWLTG SFNLTDHFTL YLHKEAVILG SQDLEDWPLI 120 PPLPSYGMGR DAPGPRYSSL INGYNLTDVV ITGDNGTIDG QGAIWWQKFH KNILKNTRGY 180 LVELMYSKDI IISNLTFLNS PAWNLHPVYS SNILIQYVTI LAPLDSPNTD GIDPDSCSYV 240 RIEDCYVVSG DDIVAIKSGW DEYGISFGMP SQHIVIRRLV GISPTSAIIA LGSEMSGGIQ 300 DVRAEDIQAI 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 3.0e-12 | 41 | 259 | 231 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 6.0e-17 | 32 | 259 | 233 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-20 | 141 | 259 | 120 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 8.0e-21 | 40 | 266 | 239 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 4.0e-45 | 43 | 306 | 287 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABR18040.1 | 0 | 1 | 310 | 1 | 313 | unknown [Picea sitchensis] |
| GenBank | ACG41831.1 | 0 | 33 | 310 | 2 | 281 | glycoside hydrolase, family 28 [Zea mays] |
| DDBJ | BAD67712.1 | 0 | 33 | 310 | 48 | 327 | putative polygalacturonase [Oryza sativa Japonica Group] |
| RefSeq | NP_001151164.1 | 0 | 26 | 310 | 42 | 328 | glycoside hydrolase, family 28 [Zea mays] |
| RefSeq | XP_002437680.1 | 0 | 1 | 310 | 14 | 330 | hypothetical protein SORBIDRAFT_10g000660 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 1e-36 | 36 | 306 | 21 | 316 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 1e-36 | 36 | 306 | 21 | 316 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 1e-36 | 36 | 306 | 21 | 316 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 1e-36 | 36 | 306 | 21 | 316 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.0000000003 | 87 | 258 | 52 | 230 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
