Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000121223 |
Family | PL4 |
Protein Properties | Length: 422 Molecular Weight: 48157.1 Isoelectric Point: 5.4776 |
Chromosome | Chromosome/Scaffold: 003870374 Start: 1672 End: 5366 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 2 | 421 | 0 |
SSAAVRLHIQGPHVVMDNGILQVTLSNPDGIVTGIRYNGIDNLLEPLNKETNRGYWDLVWSAPGSKGIFDVIKGTTFKVIVENEEQVELSFSKMWDHSLE GKYVPLNIDKRFVMLRGSSGFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVSDNRQRYMPLPDDRLPGRCQTLAYQEAVLLVNPKMKDLAGEVD DKYQYSCDNKDNKVHGWICTNPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSGHYAGQDLVPKFRGGEPWKKVFGPVFIYLNSSTIKDDPFWL WEDAKIQMMTEVQSWPYSFPASEDFQKSDQRGNVSGRLLVLDRYICEQYTPAGGAYVGLAPPGDVGSWQRECKDYQFWTTADDRGYFAINNVRTGNYNLY AWVPGFIGDYRYDAVIDITS |
Full Sequence |
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Protein Sequence Length: 422 Download |
MSSAAVRLHI QGPHVVMDNG ILQVTLSNPD GIVTGIRYNG IDNLLEPLNK ETNRGYWDLV 60 WSAPGSKGIF DVIKGTTFKV IVENEEQVEL SFSKMWDHSL EGKYVPLNID KRFVMLRGSS 120 GFYSYAIYEH LKDWPDFDIG ETRITFKLRK DKFQYMAVSD NRQRYMPLPD DRLPGRCQTL 180 AYQEAVLLVN PKMKDLAGEV DDKYQYSCDN KDNKVHGWIC TNPPVGFWQI TPSDEFRSGG 240 PLKQNLTSHV GPTTLAMFLS GHYAGQDLVP KFRGGEPWKK VFGPVFIYLN SSTIKDDPFW 300 LWEDAKIQMM TEVQSWPYSF PASEDFQKSD QRGNVSGRLL VLDRYICEQY TPAGGAYVGL 360 APPGDVGSWQ RECKDYQFWT TADDRGYFAI NNVRTGNYNL YAWVPGFIGD YRYDAVIDIT 420 SX |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 6.0e-29 | 331 | 421 | 91 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 5.0e-81 | 6 | 297 | 298 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 1.0e-104 | 1 | 200 | 200 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 1 | 420 | 1 | 432 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 17 | 420 | 1 | 404 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002301112.1 | 0 | 17 | 421 | 1 | 405 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002306520.1 | 0 | 17 | 421 | 1 | 405 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527352.1 | 0 | 1 | 421 | 1 | 421 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY293973 | 353 | 1 | 347 | 0 |
DW479599 | 294 | 1 | 291 | 0 |
DW479600 | 294 | 1 | 291 | 0 |
GO266963 | 263 | 1 | 263 | 0 |
DT552229 | 293 | 17 | 305 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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