| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000125554 |
| Family | PL1 |
| Protein Properties | Length: 365 Molecular Weight: 40440.7 Isoelectric Point: 8.8599 |
| Chromosome | Chromosome/Scaffold: 01049392 Start: 1992 End: 5163 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 211 | 284 | 4.8e-25 |
| LVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYAA | |||
| Full Sequence |
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| Protein Sequence Length: 365 Download |
| MAVFESKKKW VGAFVTVLLV CCFAAAVVXE ISRNRVAEDD EGFNKHAVED PEEIASMVDM 60 SIRNSTERRK LGYFSCGTGN PIDDCWRCDP NWHKNRKRLA DCGIGFGRNA IGGRDGRFYV 120 VTDPNDDDPV NPRPGTLRHA VIQTKPLWIV FKRDMVIRLK QELIMNSFKT IDGRGVNVHI 180 ANGGCITIQF VTNIIIHGLH IHDCKPTGNA LVMLLGHSDS YTRDKQMQVT IAYNHFGEGL 240 IQRMPRCRHG YFHVVNNDYT HWEMYAIGGS AEPTINSQGN RYAAPTNPFA KEVTKRVETA 300 ATKWKNWNWR SEGDLLLNGA YFTPSGAGAS ASYARASSLG AKSSAMVGAI TSGSGALPCR 360 RGHPC |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-8 | 182 | 297 | 121 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-30 | 201 | 282 | 82 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-38 | 154 | 285 | 191 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK66161.1 | 0 | 61 | 365 | 1 | 368 | pectate lyase [Fragaria x ananassa] |
| GenBank | ADD62392.1 | 0 | 35 | 365 | 52 | 445 | pectase lyase [Prunus persica] |
| DDBJ | BAF43573.1 | 0 | 22 | 365 | 2 | 425 | pectate lyase [Prunus persica] |
| RefSeq | XP_002297822.1 | 0 | 35 | 365 | 56 | 450 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304700.1 | 0 | 35 | 365 | 58 | 452 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 80 | 326 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 80 | 326 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pe9_B | 0.0003 | 212 | 331 | 209 | 330 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pe9_A | 0.0003 | 212 | 331 | 209 | 330 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1ooc_B | 0.0003 | 212 | 331 | 209 | 330 | A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A |
| Transmembrane Domains | ||||
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| Start | End | |||
| 10 | 29 | |||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO778688 | 393 | 37 | 365 | 0 |
| DR991721 | 178 | 35 | 212 | 0 |
| EC964189 | 294 | 135 | 365 | 0 |
| HX869181 | 178 | 35 | 212 | 0 |
| DW349251 | 178 | 35 | 212 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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