Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000128139 |
Family | GH28 |
Protein Properties | Length: 562 Molecular Weight: 63004.4 Isoelectric Point: 9.5511 |
Chromosome | Chromosome/Scaffold: 013955380 Start: 9453 End: 14649 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 205 | 523 | 0 |
GREHPGPRYGSLIHGQNLKDIVITGHNGTINGQGQTWWKKYLQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNITIRNVTILAPILKAP NTDGIDPDSCEDMVIEDCYISVGDDGIAIKSGWDQYGISYGRPSKNILIRNLVVRSMVRLQFWMESSNNALVRLYSSVSSPVSCAGVSIGSEMSGGVSNV TVENLLVWSSRRAVRIKTAPGRGGYVRQITYRNLTFDNVRVGIVIKTDYNEHPDEGYDPKALPVLKDISFTSVHGQGVRVPVRIHGSEEIPVRNVTFRDM SVGLTYKKKHIFQCAFVQG |
Full Sequence |
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Protein Sequence Length: 562 Download |
MVETLPLGRF HHQRLDLKRW FPAFLSSHKT LFTVLWIAAF ASVFVWQRNI VKGFSIFRRA 60 SAREMPKLRP VAFNLTDFGA VGDGVTLNTE AFEKAVLAIS KLGKKGGGQL NVPPGRWLTA 120 PFNLTSHMTL FLAEDAEILG IQFGSNGDYI MIAVTLFGKD LKFNNNNKGS LFIEVHRTGL 180 MLVNNQTKDE KYWPLMPPLP SYGYGREHPG PRYGSLIHGQ NLKDIVITGH NGTINGQGQT 240 WWKKYLQKLL NNTRGPLVQI MWSSDILISN ITLRDSPFWT LHPYDCKNIT IRNVTILAPI 300 LKAPNTDGID PDSCEDMVIE DCYISVGDDG IAIKSGWDQY GISYGRPSKN ILIRNLVVRS 360 MVRLQFWMES SNNALVRLYS SVSSPVSCAG VSIGSEMSGG VSNVTVENLL VWSSRRAVRI 420 KTAPGRGGYV RQITYRNLTF DNVRVGIVIK TDYNEHPDEG YDPKALPVLK DISFTSVHGQ 480 GVRVPVRIHG SEEIPVRNVT FRDMSVGLTY KKKHIFQCAF VQGRVIGTIF PAPCENLDQY 540 DEQGKLVKHS ASQNMTDIDY DF |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02793 | PLN02793 | 7.0e-20 | 211 | 553 | 355 | + Probable polygalacturonase |
PLN03003 | PLN03003 | 9.0e-31 | 72 | 506 | 445 | + Probable polygalacturonase At3g15720 |
pfam00295 | Glyco_hydro_28 | 9.0e-36 | 217 | 513 | 306 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
COG5434 | PGU1 | 9.0e-62 | 72 | 464 | 402 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69988.1 | 0 | 1 | 562 | 1 | 509 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277239.1 | 0 | 1 | 562 | 1 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324728.1 | 0 | 1 | 562 | 1 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326133.1 | 0 | 1 | 562 | 1 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516244.1 | 0 | 1 | 562 | 2 | 494 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 66 | 503 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 66 | 503 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 66 | 503 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 66 | 503 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00000000000003 | 232 | 499 | 117 | 359 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778855 | 517 | 1 | 517 | 0 |
FN769574 | 345 | 193 | 537 | 0 |
FE707848 | 372 | 74 | 445 | 0 |
JK989090 | 321 | 242 | 562 | 0 |
FC892952 | 352 | 9 | 356 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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