Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000128761 |
Family | GH28 |
Protein Properties | Length: 480 Molecular Weight: 53323.8 Isoelectric Point: 7.1812 |
Chromosome | Chromosome/Scaffold: 01566675 Start: 4988 End: 7191 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 121 | 435 | 0 |
AVMFLVPNNLSFLIQPIVFEGPCKSRLVFQIEGTLMPPDGPDQWPPNTKRQDWLLFKEVHRMLMQGNGLLNGKGEKWWDLPCKPHKGGKGSCDSPSIIRF SKGSDLFVRGLRLENSPKIHIRFDSCEHVSVESISIISPEDSPNTDGIHIEDTTNAEIHHSTISTGDDCVSIGTGCYNVDISYMTCGPSHGISIGSLGEG NSQACVTNITVSDSIIKNSDNGVRIKTWQGGSGMVSKVTFKDIHMDTVLNPIIINQFYCLKKQCSNQTSAVLIDSVQFSNIMGTYDSRKPPIHLACSDSL PCKNLTLSGIHLLPA |
Full Sequence |
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Protein Sequence Length: 480 Download |
MKLXRFFKLL FVXLLVFVIV FFQKQHIKHK DLHXTSRILN WPWPSYHVPK IWPPYSSPSV 60 YPKSPSVQIP ESPPPDXLEN PYKLRVFNVL DFGAQGNGVK DDTEAFKDTW NAVCQAEIST 120 AVMFLVPNNL SFLIQPIVFE GPCKSRLVFQ IEGTLMPPDG PDQWPPNTKR QDWLLFKEVH 180 RMLMQGNGLL NGKGEKWWDL PCKPHKGGKG SCDSPSIIRF SKGSDLFVRG LRLENSPKIH 240 IRFDSCEHVS VESISIISPE DSPNTDGIHI EDTTNAEIHH STISTGDDCV SIGTGCYNVD 300 ISYMTCGPSH GISIGSLGEG NSQACVTNIT VSDSIIKNSD NGVRIKTWQG GSGMVSKVTF 360 KDIHMDTVLN PIIINQFYCL KKQCSNQTSA VLIDSVQFSN IMGTYDSRKP PIHLACSDSL 420 PCKNLTLSGI HLLPAXGGTH LDPFCSQAFG TKDAFSTPRV PCLMTGYPKG LENEVDRSCF 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-72 | 87 | 439 | 357 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 1.0e-72 | 85 | 438 | 356 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-83 | 120 | 432 | 313 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-86 | 88 | 432 | 353 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-112 | 68 | 463 | 398 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 86 | 476 | 88 | 482 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002276945.1 | 0 | 67 | 477 | 44 | 463 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002318932.1 | 0 | 57 | 479 | 53 | 473 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330008.1 | 0 | 85 | 469 | 20 | 407 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512560.1 | 0 | 9 | 479 | 3 | 470 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 5e-26 | 182 | 432 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-26 | 182 | 432 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-26 | 182 | 432 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 5e-26 | 182 | 432 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 5e-26 | 182 | 432 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |