| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000130769 |
| Family | GH28 |
| Protein Properties | Length: 479 Molecular Weight: 52366.1 Isoelectric Point: 6.782 |
| Chromosome | Chromosome/Scaffold: 01896143 Start: 2665 End: 5658 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 85 | 430 | 0 |
| TRKGGAKLFVPAGRWLTGSFRLISHLTLWLDKDAVILGSTKSDDWPIVEPLPSYGRGRELAGGRHRSLIYGCDLTDIIITGDNGTIDGQGSIWWDWFHSK TLNYTRPHLLELINSTGVVISNLTFLNSPFWTIHPVYCSHVTIQNLTILAPLKSPNTDGIDPDSSDNVCIEDCYISTGDDLISIKSGWDEYGISYGRPSR NIIIHRITGKTETSAGIAIGSEMSGGVSEVHVEDLHFFGSKTGIRIKTSPGRGGYVRNIYVSNMNLDGVGIALRFTSQYGEHPDEFYNPNALPKVERITF KNIIGENIKTAGLLEGLEGEKFLNICLSNITLNVRSKSPWKCSSVQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 479 Download |
| MMRTTTSSSS STLTVTVVDV LLLLALLGAA APSSVKGSPK CSNQANSGEI RPHSVAITEF 60 GAVGDGVTLN TKAFQNAVFY LNSFTRKGGA KLFVPAGRWL TGSFRLISHL TLWLDKDAVI 120 LGSTKSDDWP IVEPLPSYGR GRELAGGRHR SLIYGCDLTD IIITGDNGTI DGQGSIWWDW 180 FHSKTLNYTR PHLLELINST GVVISNLTFL NSPFWTIHPV YCSHVTIQNL TILAPLKSPN 240 TDGIDPDSSD NVCIEDCYIS TGDDLISIKS GWDEYGISYG RPSRNIIIHR ITGKTETSAG 300 IAIGSEMSGG VSEVHVEDLH FFGSKTGIRI KTSPGRGGYV RNIYVSNMNL DGVGIALRFT 360 SQYGEHPDEF YNPNALPKVE RITFKNIIGE NIKTAGLLEG LEGEKFLNIC LSNITLNVRS 420 KSPWKCSSVQ GYSDLVSPET CAPLKENISP RHYSDCYSLS DDTWISSSNQ NRGARWLSW 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 1.0e-21 | 53 | 336 | 302 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 1.0e-22 | 52 | 389 | 356 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 4.0e-30 | 53 | 389 | 361 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-31 | 173 | 429 | 263 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 8.0e-62 | 55 | 367 | 336 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU18828.1 | 0 | 29 | 473 | 18 | 459 | unknown [Glycine max] |
| EMBL | CBI37055.1 | 0 | 29 | 479 | 18 | 466 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002273855.1 | 0 | 29 | 479 | 69 | 517 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301554.1 | 0 | 31 | 458 | 20 | 445 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002535132.1 | 0 | 35 | 479 | 34 | 476 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 1.96182e-44 | 43 | 416 | 16 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 1.96182e-44 | 43 | 416 | 16 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 1.96182e-44 | 43 | 416 | 16 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 1.96182e-44 | 43 | 416 | 16 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 2e-24 | 99 | 430 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
