y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000133529 |
Family | PL1 |
Protein Properties | Length: 549 Molecular Weight: 60873.3 Isoelectric Point: 5.8852 |
Chromosome | Chromosome/Scaffold: 02743516 Start: 1269 End: 5117 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 141 | 340 | 0 |
IVFPGNMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNVHIHHCHQSGQANVRSSPTHYGFRTESDGDGISIFGSKDIWIDHCSLSHC KDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAP |
Full Sequence |
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Protein Sequence Length: 549 Download |
MIPRTCIVLL FLLTSFYPLA SAFVNLTLPG QHPNPDEVVL QVNRMVNASL ARRHMLQTTQ 60 KDQLXSACLT GNPIDDCWKC DPDWPNNRQS LADCAIGFGQ YAHGGKGGEY YIVTDSSDDD 120 AVTPRPGTLR YAVIQTEPLW IVFPGNMLIK LSQELIFNSY KTLDGRGANV HIVGGGCITL 180 QYISNVIIHN VHIHHCHQSG QANVRSSPTH YGFRTESDGD GISIFGSKDI WIDHCSLSHC 240 KDGLIDAVMG STGITISNNY FSHHNEVMLL GHSDDYLPDS GMQVTIAFNH FGEKLVQRMP 300 RCRRGYIHVV NNDFTQWEMY AIGGSGNPTI NSQGNRYTAP SDRNAKEVTK RVETXEGKWR 360 DWNWRSEGDI MVNGAFFVAS GEGMELKYEK AYSVEPKSAV LIDQLIMHAG ALGVGGSSCQ 420 IYGAWVDFRL KLREEKNERD EYKRDNNLGK WSSDGDGNGL GSGPDYTDDM SGSSSILLPP 480 LPSTCTVFSF FISLSFLLVF GFLLYIHPVE VTNLVLGMAG WIELEGNDVL GFDAKYVVQR 540 TSVSMLSLT 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 4.0e-21 | 159 | 335 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-59 | 153 | 337 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 8.0e-69 | 146 | 341 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM61400.1 | 0 | 1 | 500 | 1 | 473 | pectate lyase-like protein [Arabidopsis thaliana] |
EMBL | CAB64222.1 | 0 | 32 | 500 | 15 | 454 | pectate lyase-like protein [Arabidopsis thaliana] |
RefSeq | NP_566979.1 | 0 | 1 | 500 | 2 | 474 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002265853.1 | 0 | 1 | 429 | 115 | 539 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002519460.1 | 0 | 22 | 515 | 22 | 483 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 72 | 412 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 72 | 412 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 7e-18 | 90 | 337 | 1 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.0000000000002 | 165 | 312 | 138 | 299 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.0000000000003 | 162 | 411 | 90 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |