Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000135108 |
Family | GH28 |
Protein Properties | Length: 467 Molecular Weight: 51266.5 Isoelectric Point: 7.4231 |
Chromosome | Chromosome/Scaffold: 004087552 Start: 2647 End: 4493 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 96 | 436 | 0 |
TACQSDESXARILVPQGFSFMIQSTIFTGPCLGGLVLQVDGTLXPPDGPGSWPKHISRHQWLVFNRINEMSLQGGGVIDGRGEKWWNLPCKPHRGINGTT LPGPCDSPIAIRFFMSSNLTVQGLXIKNSPQFHFRFDSCRNVHIESISISSPAKSPNTDGIHIEKTYDVQIYNSVISNGDDCVSIGSGCYDVNIRNLTCG PGHGISIGSLGNHNSRACVSNITVRDSIMKGTDNGVRIKTWQGGSGSVSGVTFSNIHMDNVKNPIMIDQYYCPTKRCTNQTSAVFVSDILYSNIKGTYDV XSSPMHFACSDALPCTNLTLSEVELLPAVRYKVSDPYCWNA |
Full Sequence |
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Protein Sequence Length: 467 Download |
MKNCKFSLLV FCISFFCFLL VPNQACRWHN HTKQKYSHKQ SHISPPPCSL PDPTTPXEEP 60 PTKPYHSSGI FDVRSFGAVG DGQTDDTVAF KMAWXTACQS DESXARILVP QGFSFMIQST 120 IFTGPCLGGL VLQVDGTLXP PDGPGSWPKH ISRHQWLVFN RINEMSLQGG GVIDGRGEKW 180 WNLPCKPHRG INGTTLPGPC DSPIAIRFFM SSNLTVQGLX IKNSPQFHFR FDSCRNVHIE 240 SISISSPAKS PNTDGIHIEK TYDVQIYNSV ISNGDDCVSI GSGCYDVNIR NLTCGPGHGI 300 SIGSLGNHNS RACVSNITVR DSIMKGTDNG VRIKTWQGGS GSVSGVTFSN IHMDNVKNPI 360 MIDQYYCPTK RCTNQTSAVF VSDILYSNIK GTYDVXSSPM HFACSDALPC TNLTLSEVEL 420 LPAVRYKVSD PYCWNAYGEL LTGTIPPXSC LLDGVPRSLL GHEIERC |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-77 | 65 | 451 | 393 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 3.0e-87 | 65 | 447 | 389 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-91 | 100 | 420 | 321 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-99 | 73 | 420 | 351 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-115 | 67 | 453 | 389 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 65 | 467 | 83 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002272733.1 | 0 | 65 | 467 | 64 | 456 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002302793.1 | 0 | 1 | 467 | 1 | 457 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320271.1 | 0 | 66 | 467 | 38 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515219.1 | 0 | 66 | 467 | 137 | 537 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-27 | 165 | 420 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-27 | 165 | 420 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-27 | 165 | 420 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-27 | 165 | 420 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-27 | 165 | 420 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |