| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000137211 |
| Family | AA3 |
| Protein Properties | Length: 550 Molecular Weight: 59776.2 Isoelectric Point: 8.9371 |
| Chromosome | Chromosome/Scaffold: 004932328 Start: 11228 End: 13562 |
| Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA3 | 50 | 544 | 0 |
| LQEEYDYIVVGGGTAGCPLATTLSANYSVLLLERGDIPTTYPSVSTVEGILENFMLEDDGTTPLQRFVSEDGVANVRGRILGGTSMVSGGAYSRADSEFY KKSGIKLDMNLVNKSYEWVEDTIVFRPNVSQWQSVVKDALLEAGVRPDNGFTLDSVEGTKISGALFDNRGRRYGAVELLNKGHPKNLRVAIHATVERIIF SSKASDPSAKGIIYNDSNGRSHWASIRGKGEVILSAGAIGSPQLLLLSGVGPKSYLTSLKIPVVHPQPYVGKFMRDNPRSNIIILPPSPIVPTYSQIAGF TSDFDIESISGTPYSSQAYSIFPNPTIPVTINSSFGFFMVKVRGPILSHGSLKLQSSYDAKVAPNVKFNYFAKEGDLSQCVSAMGKMRDLLKTNALKPFK TRDLPGLEGFNLFKPSLPMNQSDDASFCRDTVATHWHYHGGCSAGKVVDGDLRVTGIKALRVVDGSIFNSSPGTNPQATLMMLGRYVGLRILEER | |||
| Full Sequence |
|---|
| Protein Sequence Length: 550 Download |
| MEKSTTAAIL LVFYIFVLCP QPGIHSLAPP SDVRDFSYLK FVRNATDLPL QEEYDYIVVG 60 GGTAGCPLAT TLSANYSVLL LERGDIPTTY PSVSTVEGIL ENFMLEDDGT TPLQRFVSED 120 GVANVRGRIL GGTSMVSGGA YSRADSEFYK KSGIKLDMNL VNKSYEWVED TIVFRPNVSQ 180 WQSVVKDALL EAGVRPDNGF TLDSVEGTKI SGALFDNRGR RYGAVELLNK GHPKNLRVAI 240 HATVERIIFS SKASDPSAKG IIYNDSNGRS HWASIRGKGE VILSAGAIGS PQLLLLSGVG 300 PKSYLTSLKI PVVHPQPYVG KFMRDNPRSN IIILPPSPIV PTYSQIAGFT SDFDIESISG 360 TPYSSQAYSI FPNPTIPVTI NSSFGFFMVK VRGPILSHGS LKLQSSYDAK VAPNVKFNYF 420 AKEGDLSQCV SAMGKMRDLL KTNALKPFKT RDLPGLEGFN LFKPSLPMNQ SDDASFCRDT 480 VATHWHYHGG CSAGKVVDGD LRVTGIKALR VVDGSIFNSS PGTNPQATLM MLGRYVGLRI 540 LEERSASKGR |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| pfam05199 | GMC_oxred_C | 4.0e-24 | 396 | 533 | 145 | + GMC oxidoreductase. This domain found associated with pfam00732. |
| TIGR03970 | Rv0697 | 8.0e-33 | 55 | 533 | 522 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. |
| TIGR01810 | betA | 8.0e-37 | 55 | 533 | 555 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. |
| COG2303 | BetA | 2.0e-46 | 52 | 547 | 560 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] |
| PLN02785 | PLN02785 | 9.0e-161 | 52 | 544 | 541 | + Protein HOTHEAD |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL11514.1 | 0 | 1 | 547 | 1 | 547 | AF412329_1 R-oxynitrile lyase isoenzyme 1 precursor [Prunus dulcis] |
| GenBank | ACY69987.1 | 0 | 21 | 545 | 16 | 537 | mandelonitrile lyase 1 [Eriobotrya japonica] |
| Swiss-Prot | O50048 | 0 | 1 | 548 | 1 | 550 | MDL2_PRUSE RecName: Full=(R)-mandelonitrile lyase 2; AltName: Full=Hydroxynitrile lyase 2; Short=(R)-oxynitrilase 2; Flags: Precursor |
| Swiss-Prot | P52706 | 0 | 1 | 547 | 1 | 547 | MDL1_PRUSE RecName: Full=(R)-mandelonitrile lyase 1; AltName: Full=Hydroxynitrile lyase 1; Short=(R)-oxynitrilase 1; Flags: Precursor |
| Swiss-Prot | P52707 | 0 | 1 | 548 | 1 | 549 | MDL3_PRUSE RecName: Full=(R)-mandelonitrile lyase 3; AltName: Full=Hydroxynitrile lyase 3; Short=(R)-oxynitrilase 3; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ju2_B | 0 | 27 | 547 | 1 | 520 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 1ju2_A | 0 | 27 | 547 | 1 | 520 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 3gdp_B | 0 | 27 | 547 | 1 | 520 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 3gdp_A | 0 | 27 | 547 | 1 | 520 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 3gdn_B | 0 | 27 | 547 | 1 | 520 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
