Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000137792 |
Family | GH28 |
Protein Properties | Length: 563 Molecular Weight: 61277.7 Isoelectric Point: 7.3584 |
Chromosome | Chromosome/Scaffold: 006973114 Start: 2000 End: 4949 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 72 | 419 | 0 |
DKGGAQLYVPPGRWLTGSFNLTSHLTLFLEKGAVILGSQDPSHWEIVEPLPSYGRGIELPGRRYGSLINGYMLRDVVITGDNGTINGQGSVWWDWFSSKS LNYSRPHLVEFVMSKYVVVSNLTFVNAPAYNIHPVYCSNVHVHNISVSAPPDSPHTVGIVPDSSDIVCIEDCSIGMGYDAIALKSGWDEYGIAYGRPTAN VHIRRVTLQSATGSSLAFGSEMSGGISNVLVEKVRLNNSFSGIQFRTTKGRGGYIKDVIISDVEMENIYMAFGASGQFGSHPDDKYDPNALPVLDHITLQ GVVGTNITIAGCFTGIKESPFTSFFLSNISLSLNSASPTTWNCSYVSG |
Full Sequence |
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Protein Sequence Length: 563 Download |
MKMLAVFLLL LAVSNAVKLN GEDDEKPCDS KLTLEQRPHS VSISEFGAVG DGKTLNTHAF 60 QNAIFYLKSF ADKGGAQLYV PPGRWLTGSF NLTSHLTLFL EKGAVILGSQ DPSHWEIVEP 120 LPSYGRGIEL PGRRYGSLIN GYMLRDVVIT GDNGTINGQG SVWWDWFSSK SLNYSRPHLV 180 EFVMSKYVVV SNLTFVNAPA YNIHPVYCSN VHVHNISVSA PPDSPHTVGI VPDSSDIVCI 240 EDCSIGMGYD AIALKSGWDE YGIAYGRPTA NVHIRRVTLQ SATGSSLAFG SEMSGGISNV 300 LVEKVRLNNS FSGIQFRTTK GRGGYIKDVI ISDVEMENIY MAFGASGQFG SHPDDKYDPN 360 ALPVLDHITL QGVVGTNITI AGCFTGIKES PFTSFFLSNI SLSLNSASPT TWNCSYVSGS 420 SESVFPEPCS DLNTSYSNPS SARFSLLTLN GKAAICSPAC SSSTSRRLFV QLHFFIHVVL 480 VQKFYYPPVH RDSMALKSKC IGYTEEQENP VIVKLLFAVV GNMSGESWYG KKGKSGIKLY 540 NGVFVAKVKT ERNAYGCVSL LVN |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 7.0e-15 | 33 | 339 | 331 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-21 | 146 | 376 | 239 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 9.0e-23 | 39 | 339 | 305 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 2.0e-28 | 38 | 339 | 320 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 2.0e-50 | 41 | 353 | 335 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 14 | 429 | 12 | 427 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 1 | 429 | 1 | 429 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314352.1 | 0 | 16 | 438 | 14 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328589.1 | 0 | 1 | 454 | 1 | 448 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516982.1 | 0 | 14 | 454 | 12 | 452 | Polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1e-33 | 39 | 455 | 26 | 447 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1e-33 | 39 | 455 | 26 | 447 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1e-33 | 39 | 455 | 26 | 447 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1e-33 | 39 | 455 | 26 | 447 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00000000000002 | 85 | 339 | 52 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |