y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000137872 |
Family | PL1 |
Protein Properties | Length: 403 Molecular Weight: 44879.9 Isoelectric Point: 8.2766 |
Chromosome | Chromosome/Scaffold: 006102359 Start: 10590 End: 12231 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 155 | 333 | 0 |
VIQTGPLWIIFAHDMKIKLSEELMVTSDKTIDARGANVHIQDGGQITLQFVKNVIIHNLHIHDNKAGNGGMIRDSVNHYGQRTRSDGDGISMYGASNVWI DHVSASNCEDGLIDAIQGSTAITISNCHFTNHNDVMLFGSSDSNSQDEVMQITIAFNHFGQGLTQRMPRCRWGFFHVVT |
Full Sequence |
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Protein Sequence Length: 403 Download |
MAMEAAYKLF VFILCIFIVA ITIPATVTAN IAVFDEHWQG RAKEAKQAAN KAYNKNPAEV 60 TGSFNKEVHN TFDSMNNTRR NLKEKYKGPC VATNPIDRCW RCDPNWETNR KKLADCAKGF 120 GHKTTGGKAG EIYVVTDNSD NDLVNPKPGT LRHAVIQTGP LWIIFAHDMK IKLSEELMVT 180 SDKTIDARGA NVHIQDGGQI TLQFVKNVII HNLHIHDNKA GNGGMIRDSV NHYGQRTRSD 240 GDGISMYGAS NVWIDHVSAS NCEDGLIDAI QGSTAITISN CHFTNHNDVM LFGSSDSNSQ 300 DEVMQITIAF NHFGQGLTQR MPRCRWGFFH VVTKREYAAE NVWKSWNWRS ENDLMVNGAF 360 FIESGSPIRN LPEADMIQAK PGTFVAKLTR FAGPLKCIKG KPC 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 6.0e-7 | 30 | 82 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 1.0e-28 | 124 | 331 | 218 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-50 | 175 | 332 | 180 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-58 | 168 | 332 | 176 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ62997.1 | 0 | 3 | 403 | 1 | 447 | oil palm polygalacturonase allergen PEST411 [Elaeis guineensis] |
RefSeq | XP_002270089.1 | 0 | 22 | 403 | 19 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 16 | 403 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330086.1 | 0 | 12 | 403 | 7 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 9 | 403 | 8 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 94 | 393 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 94 | 393 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 8e-17 | 114 | 331 | 15 | 208 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 0.000000000003 | 172 | 330 | 71 | 240 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1vbl_A | 0.00000000001 | 177 | 331 | 128 | 296 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |