Basic Information | |
---|---|
Species | Malus domestica |
Cazyme ID | MDP0000144890 |
Family | PL4 |
Protein Properties | Length: 728 Molecular Weight: 82892.5 Isoelectric Point: 9.5964 |
Chromosome | Chromosome/Scaffold: 0320809 Start: 1396 End: 7234 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL4 | 99 | 707 | 0 |
LIKTKNQVVMDNGIVRLTFSYPGGDVIGIKYKGIDNLLEIKNQENNRGYWDVVWNNKETGGIDKLQGRRFKIITARADQTEISFTKTYDISRGNATLSMN VDKRYIMQRGRAGFYAYSIFERPKGWPGLDIDQIRIVYKLQQDKFQFMAVSDDRQRVMPTADDRSNGIKLAYPEAVLXTNPSNPDLRGEVDDKYQYSSED KDNKVHGWICTKPAVGFWIITPSDEFRTAGPFKQDLTSHVGPTALSIYLIQMFVSTHYAGKEVGXRFARGEAWKKVFGPVFVYLNSVPSLNESALWENAK EQLVEEVKSWPYSFXQSEDIPSSSGRGSVAGQLLVRDRYTSKSLVWASSAYVGLAAPGKAGSWQKESKGYQFWTQANEQGHFLIKDVRPGNYSLYATVPG IIGDYKFKSNITIEPGSEINLANLTYVPPRNGPTLWEIGIPDRSAAEFYVPDPNPTLMNKLFTTNRAHKFRQYGLWERYADLYPDEDLIYNIGTDNYSDN WFFAHVTRNIGNRTYEATTWRILFELQDLTNTGNYTLQLALASATNAEVQVRFNXQSAFPPHFTTGLIGKDNAIARHGIHGLYWLFSIGVPSYRLREGNN TIYLTQSRS |
Full Sequence |
---|
Protein Sequence Length: 728 Download |
MEKVRQWSWV LGILGMLALL FFLPDDGNFA KISVRFQNLV ERKRQALSAK QRQGRALPFK 60 WXFVGPLCFA FYLLGSLYQX SRRALRSVTG SNNGLDQMLI KTKNQVVMDN GIVRLTFSYP 120 GGDVIGIKYK GIDNLLEIKN QENNRGYWDV VWNNKETGGI DKLQGRRFKI ITARADQTEI 180 SFTKTYDISR GNATLSMNVD KRYIMQRGRA GFYAYSIFER PKGWPGLDID QIRIVYKLQQ 240 DKFQFMAVSD DRQRVMPTAD DRSNGIKLAY PEAVLXTNPS NPDLRGEVDD KYQYSSEDKD 300 NKVHGWICTK PAVGFWIITP SDEFRTAGPF KQDLTSHVGP TALSIYLIQM FVSTHYAGKE 360 VGXRFARGEA WKKVFGPVFV YLNSVPSLNE SALWENAKEQ LVEEVKSWPY SFXQSEDIPS 420 SSGRGSVAGQ LLVRDRYTSK SLVWASSAYV GLAAPGKAGS WQKESKGYQF WTQANEQGHF 480 LIKDVRPGNY SLYATVPGII GDYKFKSNIT IEPGSEINLA NLTYVPPRNG PTLWEIGIPD 540 RSAAEFYVPD PNPTLMNKLF TTNRAHKFRQ YGLWERYADL YPDEDLIYNI GTDNYSDNWF 600 FAHVTRNIGN RTYEATTWRI LFELQDLTNT GNYTLQLALA SATNAEVQVR FNXQSAFPPH 660 FTTGLIGKDN AIARHGIHGL YWLFSIGVPS YRLREGNNTI YLTQSRSLGT FEGVMYDYIR 720 LEGPPPRK |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.008 | 472 | 519 | 50 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 4.0e-30 | 423 | 522 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 4.0e-47 | 534 | 722 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 1.0e-68 | 102 | 384 | 290 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 3.0e-78 | 84 | 288 | 208 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002285626.1 | 0 | 108 | 725 | 1 | 616 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002308510.1 | 0 | 67 | 724 | 19 | 671 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 106 | 725 | 1 | 618 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527229.1 | 0 | 103 | 724 | 51 | 667 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0 | 106 | 724 | 2 | 618 | lyase, putative [Ricinus communis] |