| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000146841 |
| Family | GH28 |
| Protein Properties | Length: 273 Molecular Weight: 29562.4 Isoelectric Point: 5.2408 |
| Chromosome | Chromosome/Scaffold: 000722591 Start: 9860 End: 10681 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 66 | 261 | 0 |
| DIPILIVPEGKTYLLQRIKFEGPCNSKSVHVQILGNLLAPVRGAWKECDSGDWLSFSNIENLMLDGSGKIDGQGAAWWSTSQYNARSRKLLANNDCKPNK ALQFHNCQNLKLSGLTFLNSPQAHIGINSCDNADVSDLNIHAPEDSPNTDGIDISSSTHVTIRNSFIGTGDDCIAIGDGCSFLYITNIACGPGHGI | |||
| Full Sequence |
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| Protein Sequence Length: 273 Download |
| MSITNTLVXI LXFFLASSLF IGIGQGXKIL DVTKYGAMGD GRADDSQAFF KAWKDLCXGN 60 NDATDDIPIL IVPEGKTYLL QRIKFEGPCN SKSVHVQILG NLLAPVRGAW KECDSGDWLS 120 FSNIENLMLD GSGKIDGQGA AWWSTSQYNA RSRKLLANND CKPNKALQFH NCQNLKLSGL 180 TFLNSPQAHI GINSCDNADV SDLNIHAPED SPNTDGIDIS SSTHVTIRNS FIGTGDDCIA 240 IGDGCSFLYI TNIACGPGHG IRYVSIPFFS INC |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 4.0e-50 | 24 | 261 | 242 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 8.0e-54 | 30 | 261 | 235 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-58 | 28 | 261 | 236 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 2.0e-66 | 28 | 261 | 235 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 2.0e-73 | 30 | 266 | 237 | + Probable polygalacturonase At3g15720 | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABC75354.1 | 0 | 7 | 266 | 5 | 245 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| RefSeq | NP_001078162.1 | 0 | 13 | 266 | 5 | 236 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_566524.1 | 0 | 13 | 266 | 6 | 240 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002324855.1 | 0 | 11 | 266 | 9 | 250 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515526.1 | 0 | 3 | 261 | 1 | 242 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.00000000001 | 111 | 261 | 97 | 253 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 3jur_D | 0.0000000006 | 30 | 244 | 28 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0.0000000006 | 30 | 244 | 28 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0.0000000006 | 30 | 244 | 28 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0.0000000006 | 30 | 244 | 28 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Transmembrane Domains | ||||
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| Start | End | |||
| 7 | 29 | |||
| Signal Peptide | ||||
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| Cleavage Site | ||||
| 26 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EL436301 | 233 | 30 | 261 | 0 |
| EL457180 | 238 | 25 | 261 | 0 |
| EL454770 | 233 | 30 | 261 | 0 |
| DY964976 | 234 | 29 | 261 | 0 |
| DT768233 | 232 | 30 | 261 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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