Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000147902 |
Family | GH28 |
Protein Properties | Length: 484 Molecular Weight: 52916.8 Isoelectric Point: 7.2503 |
Chromosome | Chromosome/Scaffold: 004882268 Start: 459 End: 5356 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 132 | 461 | 0 |
ACSSKEAVMVAPKKTYRIKPIRFSGPCKSQLTVQILGTLIASDDRSDFSKDGRHWLIFDSVSNLVVEGGGAINGNGKNWWQNSCKTDKSKPCKDAPTXLT FXKSKNLMVRNLTIQDGQQIHVSFQKCMNVEVSNLSITAPPKSPNTDGIHVTDTQNILITSCVIATGDDCLSIVNGSKTVQASNITCGSGHGISIGSXGS GNSKAYVSXIXVNGAKLYGTTNGXRIKTWQGGSGSASNIRFXNIEMHNVTNPILIDQYYCDRKIPCKEQRSAVEVKNVVYKNIKGTSASDVAIKFDCSKS FPCLGIXLQDINLQHEGRKTAKALCNNVNV |
Full Sequence |
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Protein Sequence Length: 484 Download |
MALQKNELIL FFIITLPSFV LCYSSLHENQ LIDKYVDEAS EFDSKAYPSY FNTIDDGSNL 60 FKGLIKESAD VLCLKSFDKV DSSTSSSAET VSVNDFGAEG DGETDDTKNI SNNWSIFTYE 120 LFQAFEMAWK VACSSKEAVM VAPKKTYRIK PIRFSGPCKS QLTVQILGTL IASDDRSDFS 180 KDGRHWLIFD SVSNLVVEGG GAINGNGKNW WQNSCKTDKS KPCKDAPTXL TFXKSKNLMV 240 RNLTIQDGQQ IHVSFQKCMN VEVSNLSITA PPKSPNTDGI HVTDTQNILI TSCVIATGDD 300 CLSIVNGSKT VQASNITCGS GHGISIGSXG SGNSKAYVSX IXVNGAKLYG TTNGXRIKTW 360 QGGSGSASNI RFXNIEMHNV TNPILIDQYY CDRKIPCKEQ RSAVEVKNVV YKNIKGTSAS 420 DVAIKFDCSK SFPCLGIXLQ DINLQHEGRK TAKALCNNVN VTSIGVVCPL CPKLEGQYEX 480 CQCL |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-75 | 93 | 466 | 383 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 9.0e-88 | 93 | 469 | 384 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-108 | 133 | 462 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-125 | 93 | 469 | 381 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 5.0e-141 | 93 | 471 | 383 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71160.1 | 0 | 1 | 479 | 1 | 461 | AF152758_1 polygalacturonase A [Actinidia chinensis] |
Swiss-Prot | P35336 | 0 | 1 | 471 | 1 | 455 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002308956.1 | 0 | 18 | 472 | 5 | 443 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002322711.1 | 0 | 1 | 471 | 1 | 452 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529616.1 | 0 | 23 | 472 | 32 | 474 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-24 | 191 | 390 | 107 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000000000000006 | 200 | 459 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000006 | 200 | 459 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000006 | 200 | 459 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000000006 | 200 | 459 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |