Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000150610 |
Family | PL1 |
Protein Properties | Length: 476 Molecular Weight: 52846.6 Isoelectric Point: 8.6606 |
Chromosome | Chromosome/Scaffold: 007749213 Start: 22346 End: 27024 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 192 | 397 | 0 |
IQDRPLWIVFKRDMVITLKQELIMNSFKTIDARGVNVHIAYGACITIQYVTNVIIHGLHIHDCKPTGNAMVRSSPNHYGWRTMADGDAISIFGSSHIWID HNSFSKCADGLVDAIMGSTALTISNNYFTHHNEVMLLGHSDSYVRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQ GNRYLA |
Full Sequence |
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Protein Sequence Length: 476 Download |
MAVSLNLFSL LSTMAVLLAL LASTNASAES GKNVNSRFVG PKESISSKNS SIAERFEEAL 60 NEHAVDNPDE IASMVDMLNP VKYHFKFYLQ KLHEKNSQQF RLLSKDNPAG SIRNSTERRN 120 LGFFSCATGN PIDDCWRCDP HWQLHRKRLA NCGIGFGRNA VGGRDGKYYV VNNPGNDDPV 180 NPRAGTLRHA VIQDRPLWIV FKRDMVITLK QELIMNSFKT IDARGVNVHI AYGACITIQY 240 VTNVIIHGLH IHDCKPTGNA MVRSSPNHYG WRTMADGDAI SIFGSSHIWI DHNSFSKCAD 300 GLVDAIMGST ALTISNNYFT HHNEVMLLGH SDSYVRDKLM QVTIAYNHFG EGLIQRMPRC 360 RHGYFHVVNN DYTHWEMYAI GGSAEPTINS QGNRYLAPNN GFAKEVTHRV NPNDWKHWNW 420 RSEGDLLLNG AYFIASGTGS GASYARASSL GAKSSSMVGS ITASAGVLNC RRGFQC 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-24 | 217 | 393 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-67 | 210 | 395 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-78 | 204 | 399 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABR26682.1 | 0 | 24 | 434 | 27 | 406 | pectate lyase [Fragaria chiloensis] |
EMBL | CAN75298.1 | 0 | 41 | 476 | 36 | 445 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002265100.1 | 0 | 41 | 476 | 36 | 445 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301766.1 | 0 | 55 | 476 | 2 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002521130.1 | 0 | 1 | 476 | 1 | 441 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 130 | 468 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 130 | 468 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-16 | 199 | 397 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000001 | 233 | 372 | 147 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.000000000003 | 220 | 467 | 151 | 406 | A Chain A, Bacillus Subtilis Pectate Lyase |