y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000152045 |
Family | GH28 |
Protein Properties | Length: 397 Molecular Weight: 42877.6 Isoelectric Point: 5.0228 |
Chromosome | Chromosome/Scaffold: 012920229 Start: 188 End: 4216 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 90 | 385 | 0 |
DEIYGTIEASAKQSDYKDSRHWILFSNLTNFRVEGGGTIDGNGRKWWQSSCKVDDSHTCTTAPNAVTFLGCNTLEVDNLKFRDAQKMHLSFESCVNVKAS NLIVTAPGDSPNTDGIHVSGTQNIGINNCLIRTGDDCISIVSGSKTVRAEDITCGPGHGISIGSLGAGNSQAEVSDVMVSRANLMDTTNGLRIKTWQGGS GYATNIRFKNVVMANVSNPIIIDQHYCDQDKPCLEQDSAVEISNVLYENVKGTSASKVAVKFDCSKDFRCQEILLKDVNLKPLADETAQASCENVS |
Full Sequence |
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Protein Sequence Length: 397 Download |
MDVTVNVDSF GAKGDGSDDS QAFTEAWKKA CSSKSDVELV VPRNRVYQLK PMDFSGPCKS 60 QVTLKLDGEE RFLCEATGXG GRGRWDTNGD EIYGTIEASA KQSDYKDSRH WILFSNLTNF 120 RVEGGGTIDG NGRKWWQSSC KVDDSHTCTT APNAVTFLGC NTLEVDNLKF RDAQKMHLSF 180 ESCVNVKASN LIVTAPGDSP NTDGIHVSGT QNIGINNCLI RTGDDCISIV SGSKTVRAED 240 ITCGPGHGIS IGSLGAGNSQ AEVSDVMVSR ANLMDTTNGL RIKTWQGGSG YATNIRFKNV 300 VMANVSNPII IDQHYCDQDK PCLEQDSAVE ISNVLYENVK GTSASKVAVK FDCSKDFRCQ 360 EILLKDVNLK PLADETAQAS CENVSLNRIG TVSPTCS 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-88 | 5 | 384 | 386 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 2.0e-95 | 2 | 394 | 398 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-109 | 31 | 384 | 354 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-137 | 4 | 397 | 397 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-140 | 7 | 394 | 391 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71160.1 | 0 | 4 | 396 | 89 | 455 | AF152758_1 polygalacturonase A [Actinidia chinensis] |
Swiss-Prot | P35336 | 0 | 4 | 396 | 89 | 455 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002313308.1 | 0 | 4 | 397 | 8 | 376 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517823.1 | 0 | 5 | 396 | 80 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529616.1 | 0 | 4 | 396 | 107 | 473 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 8e-22 | 111 | 384 | 102 | 374 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 2e-17 | 105 | 345 | 55 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-17 | 105 | 345 | 55 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-17 | 105 | 345 | 55 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 2e-17 | 105 | 345 | 55 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EE093402 | 250 | 110 | 359 | 0 |
EE091344 | 244 | 127 | 370 | 0 |
EX261408 | 295 | 5 | 298 | 0 |
EC945774 | 241 | 129 | 369 | 0 |
EX261408 | 36 | 283 | 318 | 0.00004 |
Sequence Alignments (This image is cropped. Click for full image.) |
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