Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000159240 |
Family | GH28 |
Protein Properties | Length: 459 Molecular Weight: 50022.7 Isoelectric Point: 8.377 |
Chromosome | Chromosome/Scaffold: 000024376 Start: 12780 End: 15162 |
Description | polygalacturonase abscission zone A. thaliana |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 121 | 443 | 0 |
KXACSSSGAIVLVVPQKSYLVXPIEFSGPCKSXLTMQIYGTIEASEXRSIYKDLDHWLMFDNVQNXLVVGPGTINGNGNIWWKNSCKRKPQPPCGKQAPT AVTFNRCNNLVVKNLKIQDAQQMHVRFQNCFNVQASRLTVTAPEDSPNTDGIHVTNTQNITISSSVVGTGDDCISIVSGSQRVQARDITCGPGHGISIGS LGKDGSIDHVSGVFVNGAKLSGTANGLRIKTWQGGSGSATNIVFQNVQMNDVTNPIIIDQNYCDHITKDCKQQKSAVQVKNVLYQNIRGTGVIGDAITFN CSQSVPCQGIVLQNIQLQNGRAE |
Full Sequence |
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Protein Sequence Length: 459 Download |
MXLQTHLLWS FVVLFVVSFG TTSCYGXSFQ EVNSLHSYVD HVDKESGYNS RAYPSYMDTI 60 EGFKFMELIR PRPXLFSSRK LNKITXGIAT SSAXXKTISV DDFGAKGNGA DDTQAFXKAW 120 KXACSSSGAI VLVVPQKSYL VXPIEFSGPC KSXLTMQIYG TIEASEXRSI YKDLDHWLMF 180 DNVQNXLVVG PGTINGNGNI WWKNSCKRKP QPPCGKQAPT AVTFNRCNNL VVKNLKIQDA 240 QQMHVRFQNC FNVQASRLTV TAPEDSPNTD GIHVTNTQNI TISSSVVGTG DDCISIVSGS 300 QRVQARDITC GPGHGISIGS LGKDGSIDHV SGVFVNGAKL SGTANGLRIK TWQGGSGSAT 360 NIVFQNVQMN DVTNPIIIDQ NYCDHITKDC KQQKSAVQVK NVLYQNIRGT GVIGDAITFN 420 CSQSVPCQGI VLQNIQLQNG RAECNDVQPA YKGVVSPRC |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 8.0e-85 | 98 | 442 | 349 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 2.0e-98 | 97 | 458 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-113 | 124 | 447 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-136 | 96 | 457 | 371 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-156 | 97 | 459 | 367 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC22688.1 | 0 | 1 | 459 | 1 | 460 | polygalacturonase [Pyrus communis] |
DDBJ | BAF42033.1 | 0 | 1 | 459 | 1 | 459 | polygalacturonase2 [Pyrus communis] |
EMBL | CAA54448.1 | 0 | 1 | 459 | 1 | 452 | polygalacturonase [Prunus persica] |
EMBL | CAH18929.1 | 0 | 1 | 459 | 1 | 460 | polygalacturonase [Pyrus communis] |
Swiss-Prot | P48978 | 0 | 1 | 459 | 1 | 460 | PGLR_MALDO RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-26 | 172 | 382 | 97 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000000000000001 | 194 | 382 | 80 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000001 | 194 | 382 | 80 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000001 | 194 | 382 | 80 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000000001 | 194 | 382 | 80 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |