Basic Information | |
---|---|
Species | Malus domestica |
Cazyme ID | MDP0000161615 |
Family | PL4 |
Protein Properties | Length: 218 Molecular Weight: 25361.4 Isoelectric Point: 5.3192 |
Chromosome | Chromosome/Scaffold: 001709391 Start: 16059 End: 17282 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL4 | 2 | 189 | 0 |
GDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLFVNHPDRFRQYGLWERYSELYSDQDLVYTVGVSDYSKDWFFAQVTRKNEDNKYQGTTWQI KFNLDNLDQTGSYKLRVALASATFSELQVRVNDPKANRPLFTSGMIGRDNSIARHGIHGLYWLYNVDVPSSRLVEGDNIIYLTQPRST |
Full Sequence |
---|
Protein Sequence Length: 218 Download |
MGDLVYEPPR DGPTLWEIGI PDRSAAEFYV PDPNPKYINK LFVNHPDRFR QYGLWERYSE 60 LYSDQDLVYT VGVSDYSKDW FFAQVTRKNE DNKYQGTTWQ IKFNLDNLDQ TGSYKLRVAL 120 ASATFSELQV RVNDPKANRP LFTSGMIGRD NSIARHGIHG LYWLYNVDVP SSRLVEGDNI 180 IYLTQPRSTG PFQGIMYDYL RFEGPHLQAP NDRLLLEY |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10317 | RGL4_C | 1.0e-58 | 16 | 203 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 1 | 205 | 440 | 644 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 1 | 205 | 411 | 615 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002285627.1 | 0 | 1 | 205 | 293 | 497 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
RefSeq | XP_002301112.1 | 0 | 1 | 204 | 411 | 613 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 1 | 211 | 430 | 639 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
GR828587 | 209 | 5 | 213 | 0 |
CX674004 | 205 | 1 | 205 | 0 |
EY867495 | 204 | 2 | 205 | 0 |
DR937930 | 219 | 1 | 215 | 0 |
DT729213 | 215 | 5 | 215 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|