Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000161623 |
Family | GH28 |
Protein Properties | Length: 239 Molecular Weight: 25974 Isoelectric Point: 6.9926 |
Chromosome | Chromosome/Scaffold: 002036225 Start: 12 End: 835 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 3 | 203 | 0 |
DGSGKIDGQGAAWWSTSQYDGRSRKLLGDNDCKPQKALQFQNCQNLKLSGLTFLNSPQAHIGINSCDNADVSHLNIHAPEDSPNTDGIDISFSSHVTIRD SSIGTGDDCISIGDRCSFLSITNIACGPGHGISVGSLGEDGASSKVDNIYVKDCSFTGTTNGVRIKTWQGGSGYARNITFERIKLDRAQYPIIIDQYYLL N |
Full Sequence |
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Protein Sequence Length: 239 Download |
MLDGSGKIDG QGAAWWSTSQ YDGRSRKLLG DNDCKPQKAL QFQNCQNLKL SGLTFLNSPQ 60 AHIGINSCDN ADVSHLNIHA PEDSPNTDGI DISFSSHVTI RDSSIGTGDD CISIGDRCSF 120 LSITNIACGP GHGISVGSLG EDGASSKVDN IYVKDCSFTG TTNGVRIKTW QGGSGYARNI 180 TFERIKLDRA QYPIIIDQYY LLNSNLVLGP RQVIQPKTNE KMLEDSSKEG RKLEKSKKI 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 4.0e-59 | 2 | 200 | 203 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 2.0e-63 | 2 | 200 | 200 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-67 | 1 | 201 | 201 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03010 | PLN03010 | 8.0e-68 | 1 | 201 | 201 | + polygalacturonase | ||
PLN03003 | PLN03003 | 8.0e-69 | 1 | 200 | 200 | + Probable polygalacturonase At3g15720 |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI36307.1 | 0 | 2 | 230 | 126 | 341 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_566524.1 | 0 | 1 | 200 | 116 | 301 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002266543.1 | 0 | 2 | 230 | 114 | 313 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0 | 2 | 200 | 125 | 311 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 2 | 200 | 123 | 308 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-23 | 4 | 200 | 115 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 5e-18 | 1 | 200 | 74 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-18 | 1 | 200 | 74 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-18 | 1 | 200 | 74 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 5e-18 | 1 | 200 | 74 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CV536748 | 200 | 1 | 200 | 0 |
FN026494 | 200 | 2 | 200 | 0 |
CX192293 | 200 | 1 | 200 | 0 |
DR556291 | 162 | 39 | 200 | 0 |
FN008005 | 193 | 9 | 200 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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