Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000163058 |
Family | GH28 |
Protein Properties | Length: 427 Molecular Weight: 46053.3 Isoelectric Point: 7.175 |
Chromosome | Chromosome/Scaffold: 002682326 Start: 78 End: 3263 |
Description | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 72 | 402 | 0 |
TQACQNNGGGVVLFPAGKYLVKPVVFTGGCKGPMVVQIKGTLLAPVEVKSSIDINHWITFQYVDNLVINGGGSLDGQGPSAWPYNNCMNDPHCKRLPTTL RLDFVTNSKIHDITSINSKNVHINLFASHDITIQNITISAPGDSPNTDGIHIGTSHHIEILDSVIATGDDCISFSSGSNNIKISGVHCGPGHGISIGSLG KGAGDDVSFVDIRNCTFVGTTNGVRVKTWAPSQPGTVSHLTVEXVRVDKVDNPIIIDQQYCPSRSCSTTESSRVQIQDVKFSNIWGSSTTQSAITLKCSQ TNPCQKIEMRDINLRYNGPEGSAHSACTNAD |
Full Sequence |
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Protein Sequence Length: 427 Download |
MGSSXVXQFV FLVVLLGSIT KVHADDGATS MSHVHFFRVQ LNRQKMIFNV KKYGGVADGK 60 TDNSKAFVDA WTQACQNNGG GVVLFPAGKY LVKPVVFTGG CKGPMVVQIK GTLLAPVEVK 120 SSIDINHWIT FQYVDNLVIN GGGSLDGQGP SAWPYNNCMN DPHCKRLPTT LRLDFVTNSK 180 IHDITSINSK NVHINLFASH DITIQNITIS APGDSPNTDG IHIGTSHHIE ILDSVIATGD 240 DCISFSSGSN NIKISGVHCG PGHGISIGSL GKGAGDDVSF VDIRNCTFVG TTNGVRVKTW 300 APSQPGTVSH LTVEXVRVDK VDNPIIIDQQ YCPSRSCSTT ESSRVQIQDV KFSNIWGSST 360 TQSAITLKCS QTNPCQKIEM RDINLRYNGP EGSAHSACTN ADVVTYGQQQ PLPCTEKIEL 420 LYPSIFD |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 3.0e-82 | 36 | 416 | 388 | + Probable polygalacturonase At3g15720 | ||
PLN02793 | PLN02793 | 1.0e-86 | 43 | 414 | 379 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-88 | 49 | 411 | 373 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-93 | 75 | 401 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-124 | 47 | 415 | 372 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_001152243.1 | 0 | 47 | 414 | 29 | 402 | polygalacturonase [Zea mays] |
RefSeq | XP_002276688.1 | 0 | 47 | 414 | 30 | 404 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314146.1 | 0 | 47 | 414 | 26 | 391 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002437276.1 | 0 | 47 | 414 | 31 | 403 | hypothetical protein SORBIDRAFT_10g024020 [Sorghum bicolor] |
RefSeq | XP_002526193.1 | 0 | 43 | 400 | 21 | 377 | hypothetical protein RCOM_0764760 [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 1e-17 | 49 | 385 | 22 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1bhe_A | 2e-17 | 128 | 385 | 102 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 2e-17 | 136 | 400 | 73 | 332 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 2e-17 | 136 | 400 | 73 | 332 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 2e-17 | 136 | 400 | 73 | 332 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |