| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000166129 |
| Family | PL1 |
| Protein Properties | Length: 189 Molecular Weight: 21451.5 Isoelectric Point: 10.3583 |
| Chromosome | Chromosome/Scaffold: 003598478 Start: 6 End: 806 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 2 | 105 | 1.50001e-40 |
| EMSQCEDGLLDVTRGSTDITISNNWFRDQDKVMLLGHDDGYVRDKNMRVTLVYNHFGPNCNQRMPRIRYGYAHVVNNLYRKWSQYAIGGSMNPSVKSEAN LFIA | |||
| Full Sequence |
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| Protein Sequence Length: 189 Download |
| MEMSQCEDGL LDVTRGSTDI TISNNWFRDQ DKVMLLGHDD GYVRDKNMRV TLVYNHFGPN 60 CNQRMPRIRY GYAHVVNNLY RKWSQYAIGG SMNPSVKSEA NLFIAPKRGN KEVTWRKVSN 120 SIGSKSSWKF RSVGDIFENE ASFLQTSLPV AGVMPQYKRI QSFLVAHAKA VRSLTRSSGA 180 LKCTKTSRC |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 7.0e-21 | 8 | 103 | 99 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-39 | 7 | 103 | 97 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-44 | 8 | 107 | 100 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD01325.1 | 0 | 3 | 189 | 195 | 384 | putative Cup s 1 pollen allergen [Oryza sativa Japonica Group] |
| EMBL | CBI26401.1 | 0 | 3 | 189 | 138 | 320 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 3 | 189 | 187 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 6 | 189 | 172 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 3 | 189 | 169 | 352 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 3 | 181 | 168 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 3 | 181 | 168 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1jta_A | 0.0000000000001 | 7 | 147 | 183 | 319 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1jrg_B | 0.0000000000001 | 7 | 147 | 183 | 319 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
| PDB | 1jrg_A | 0.0000000000001 | 7 | 147 | 183 | 319 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DT575750 | 182 | 3 | 184 | 0 |
| FG478648 | 189 | 3 | 189 | 0 |
| FG474249 | 186 | 3 | 188 | 0 |
| FG468635 | 160 | 3 | 162 | 0 |
| FG468822 | 155 | 3 | 157 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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